Protein–RNA interactions for Protein: Q6PGB8

Smarca1, Probable global transcription activator SNF2L1, mousemouse

Predictions only

Length 1,046 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smarca1Q6PGB8 AB041806-201ENSMUST00000062902 2105 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Smarca1Q6PGB8 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Dlx6-203ENSMUST00000171311 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Zfp385b-204ENSMUST00000111831 2734 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Smarca1Q6PGB8 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Zdhhc14-201ENSMUST00000089185 3115 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 B3gnt9-201ENSMUST00000093217 2325 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Rcc1-202ENSMUST00000084250 2285 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Kcnd3os-201ENSMUST00000130683 1091 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Gm11691-201ENSMUST00000130963 658 ntTSL 2 BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Dap-205ENSMUST00000186547 535 ntTSL 3 BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Cacfd1-202ENSMUST00000114004 2194 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
Smarca1Q6PGB8 Gadd45b-201ENSMUST00000015456 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Rasl10a-201ENSMUST00000037218 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
Smarca1Q6PGB8 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Fam118a-201ENSMUST00000023069 2543 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Gorasp2-203ENSMUST00000112205 1196 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Gm13234-201ENSMUST00000120010 747 ntBASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 BC021767-201ENSMUST00000126387 1716 ntBASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Smarca1Q6PGB8 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Spg7-209ENSMUST00000149248 2896 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
Smarca1Q6PGB8 Ipmk-201ENSMUST00000079252 5447 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
Smarca1Q6PGB8 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC21.08■□□□□ 0.96
Smarca1Q6PGB8 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.08■□□□□ 0.96
Smarca1Q6PGB8 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC21.08■□□□□ 0.96
Smarca1Q6PGB8 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Pcmtd1-201ENSMUST00000061280 5232 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Dnaja4-202ENSMUST00000120452 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Thap4-206ENSMUST00000190116 5558 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Gm16192-201ENSMUST00000148357 937 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Smarca1Q6PGB8 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Sox10-201ENSMUST00000040019 2713 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Btnl9-202ENSMUST00000066531 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Reep4-203ENSMUST00000226563 1444 ntBASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Neurl1b-203ENSMUST00000183077 1084 ntTSL 5 BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Smarca1Q6PGB8 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Qk-201ENSMUST00000042296 6718 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Smarca1Q6PGB8 Pknox1-203ENSMUST00000175806 2272 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Aars-201ENSMUST00000034441 5750 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Fam241b-209ENSMUST00000142821 1283 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
Smarca1Q6PGB8 BC005561-201ENSMUST00000096452 5409 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 23.6 ms