Protein–RNA interactions for Protein: Q6P8W9

Hmgb4, High mobility group protein B4, mousemouse

Predictions only

Length 181 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb4Q6P8W9 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Pdzd3-201ENSMUST00000034618 2193 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Laptm4a-201ENSMUST00000020909 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Lypla2-202ENSMUST00000105852 1588 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC19.82■□□□□ 0.76
Hmgb4Q6P8W9 Gm5112-201ENSMUST00000204407 2368 ntBASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 AC154266.1-201ENSMUST00000223190 503 ntBASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
Hmgb4Q6P8W9 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Anapc5-208ENSMUST00000197719 2383 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Cdk5r2-201ENSMUST00000160379 2799 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Hmgb4Q6P8W9 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Hnrnpl-211ENSMUST00000174548 2679 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Irx3-202ENSMUST00000175795 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Lrfn4-202ENSMUST00000113822 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
Hmgb4Q6P8W9 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Mgat4b-201ENSMUST00000041725 2429 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Surf4-201ENSMUST00000015011 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
Hmgb4Q6P8W9 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 Tnpo2-207ENSMUST00000211601 2941 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
Hmgb4Q6P8W9 Nudt19-201ENSMUST00000040962 2298 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.75
Hmgb4Q6P8W9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.75
Hmgb4Q6P8W9 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.75
Hmgb4Q6P8W9 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Rapgef1-203ENSMUST00000102872 6402 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Gm43909-201ENSMUST00000203443 1876 ntBASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Gm13146-201ENSMUST00000118508 780 ntBASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
Hmgb4Q6P8W9 Tmem123-201ENSMUST00000052865 2907 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Gm6420-201ENSMUST00000193885 723 ntBASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Foxk1-202ENSMUST00000198422 687 ntTSL 3 BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
Hmgb4Q6P8W9 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
Hmgb4Q6P8W9 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
Retrieved 100 of 76,532 protein–RNA pairs in 23 ms