Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ShhQ62226 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
ShhQ62226 Taz-208ENSMUST00000132437 768 ntTSL 3 BASIC17.63■□□□□ 0.41
ShhQ62226 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC17.63■□□□□ 0.41
ShhQ62226 Gm4968-201ENSMUST00000071458 858 ntBASIC17.63■□□□□ 0.41
ShhQ62226 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC17.63■□□□□ 0.41
ShhQ62226 Hsf1-204ENSMUST00000226872 2104 ntBASIC17.63■□□□□ 0.41
ShhQ62226 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ShhQ62226 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
ShhQ62226 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
ShhQ62226 Ankrd40-203ENSMUST00000107818 3487 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
ShhQ62226 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 Smc6-201ENSMUST00000020931 5603 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC17.62■□□□□ 0.41
ShhQ62226 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
ShhQ62226 Emc6-202ENSMUST00000108480 563 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
ShhQ62226 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 Nol4l-201ENSMUST00000035346 6399 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
ShhQ62226 AA386476-201ENSMUST00000098781 1665 ntBASIC17.61■□□□□ 0.41
ShhQ62226 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
ShhQ62226 Josd2-204ENSMUST00000118628 864 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
ShhQ62226 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Josd2-201ENSMUST00000035844 930 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
ShhQ62226 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Cachd1-201ENSMUST00000030257 5765 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC17.61■□□□□ 0.41
ShhQ62226 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
ShhQ62226 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
ShhQ62226 Xkr4-201ENSMUST00000070533 3634 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ShhQ62226 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
ShhQ62226 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ShhQ62226 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
ShhQ62226 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
ShhQ62226 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC17.6■□□□□ 0.41
ShhQ62226 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Reep4-203ENSMUST00000226563 1444 ntBASIC17.59■□□□□ 0.41
ShhQ62226 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Gas5-217ENSMUST00000161005 430 ntTSL 5 BASIC17.59■□□□□ 0.41
ShhQ62226 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC17.59■□□□□ 0.41
ShhQ62226 Gm45894-202ENSMUST00000212728 1097 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Igfbp6-201ENSMUST00000023807 1112 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 4930412O13Rik-201ENSMUST00000026889 1187 ntAPPRIS P5 TSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
ShhQ62226 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ShhQ62226 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.41
ShhQ62226 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
ShhQ62226 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
ShhQ62226 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ShhQ62226 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC17.58■□□□□ 0.4
ShhQ62226 Smkr-ps-202ENSMUST00000141679 901 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ShhQ62226 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.58■□□□□ 0.4
ShhQ62226 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC17.58■□□□□ 0.4
ShhQ62226 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
ShhQ62226 Cblc-201ENSMUST00000043822 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ShhQ62226 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
ShhQ62226 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC17.57■□□□□ 0.4
ShhQ62226 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Hr-203ENSMUST00000161069 5607 ntAPPRIS P2 TSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
ShhQ62226 Gm14281-201ENSMUST00000121700 1294 ntBASIC17.57■□□□□ 0.4
ShhQ62226 Gm7977-201ENSMUST00000193787 748 ntBASIC17.57■□□□□ 0.4
ShhQ62226 Cnih2-201ENSMUST00000025805 1237 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
ShhQ62226 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC17.56■□□□□ 0.4
ShhQ62226 Fam98c-203ENSMUST00000134176 1189 ntTSL 2 BASIC17.56■□□□□ 0.4
ShhQ62226 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC17.56■□□□□ 0.4
ShhQ62226 Ap3s1-204ENSMUST00000225520 957 ntBASIC17.56■□□□□ 0.4
ShhQ62226 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Rbmxl1-202ENSMUST00000211719 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
ShhQ62226 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
ShhQ62226 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
ShhQ62226 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.55■□□□□ 0.4
ShhQ62226 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC17.55■□□□□ 0.4
ShhQ62226 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
ShhQ62226 Gm42555-201ENSMUST00000199304 1039 ntBASIC17.55■□□□□ 0.4
ShhQ62226 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms