Protein–RNA interactions for Protein: Q3U319

Rnf40, E3 ubiquitin-protein ligase BRE1B, mousemouse

Predictions only

Length 1,001 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf40Q3U319 Ecel1-204ENSMUST00000161002 3033 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Gm14523-201ENSMUST00000117260 558 ntBASIC19.64■□□□□ 0.73
Rnf40Q3U319 Cutc-201ENSMUST00000026199 1298 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Cyp4f14-202ENSMUST00000179434 2207 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Cyp4f14-201ENSMUST00000054174 2207 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Etnk1-204ENSMUST00000205256 2647 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Farp1-201ENSMUST00000026635 4885 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
Rnf40Q3U319 Baiap2-204ENSMUST00000106231 4005 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Slc10a4-201ENSMUST00000031127 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 AA386476-201ENSMUST00000098781 1665 ntBASIC19.63■□□□□ 0.73
Rnf40Q3U319 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Atp9a-211ENSMUST00000178504 3668 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Sncaip-205ENSMUST00000178011 3433 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Agbl5-215ENSMUST00000202060 3121 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Cnpy1-201ENSMUST00000117098 2661 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
Rnf40Q3U319 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Mboat1-201ENSMUST00000047311 2905 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Ube2z-201ENSMUST00000100528 3997 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Ccdc6-203ENSMUST00000147545 5511 ntAPPRIS P1 TSL 5 BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Crocc-211ENSMUST00000168157 6244 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Smim19-201ENSMUST00000033935 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Fam50b-202ENSMUST00000221037 1345 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Gm7143-201ENSMUST00000222811 859 ntBASIC19.62■□□□□ 0.73
Rnf40Q3U319 Lyrm4-201ENSMUST00000053265 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Eps8-203ENSMUST00000111878 3560 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Sorcs2-201ENSMUST00000037370 5707 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
Rnf40Q3U319 Mpp3-203ENSMUST00000107167 2066 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Il4i1-201ENSMUST00000033015 2048 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Osbpl1a-207ENSMUST00000121808 3030 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Gm38534-201ENSMUST00000206566 1909 ntTSL 5 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 9330111N05Rik-202ENSMUST00000181043 2449 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Chml-203ENSMUST00000210367 1324 ntTSL 5 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Creld1-201ENSMUST00000032422 2306 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Eva1b-202ENSMUST00000106150 1144 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Gm11175-201ENSMUST00000116172 543 ntBASIC19.61■□□□□ 0.73
Rnf40Q3U319 Hnrnpk-210ENSMUST00000176558 1053 ntTSL 2 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Acad9-205ENSMUST00000196648 552 ntTSL 3 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Cd47-201ENSMUST00000084838 5277 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Ttc13-201ENSMUST00000041614 3038 ntTSL 2 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Creb1-204ENSMUST00000185594 1569 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Nrxn2-203ENSMUST00000113459 3285 ntTSL 2 BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Zfp768-201ENSMUST00000060783 2356 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Trak1-209ENSMUST00000210798 5363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.61■□□□□ 0.73
Rnf40Q3U319 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
Rnf40Q3U319 Creg1-202ENSMUST00000111432 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rnf40Q3U319 Ddx41-204ENSMUST00000224765 2199 ntBASIC19.6■□□□□ 0.73
Rnf40Q3U319 Dnlz-201ENSMUST00000028295 2916 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rnf40Q3U319 5330438I03Rik-201ENSMUST00000168347 2845 ntBASIC19.6■□□□□ 0.73
Rnf40Q3U319 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC19.6■□□□□ 0.73
Rnf40Q3U319 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
Rnf40Q3U319 Pcf11-201ENSMUST00000119954 5995 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
Rnf40Q3U319 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC19.6■□□□□ 0.73
Rnf40Q3U319 Etv5-201ENSMUST00000079601 3975 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 St8sia5-202ENSMUST00000079618 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Tle3-211ENSMUST00000161689 2836 ntTSL 2 BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Slc25a47-202ENSMUST00000221080 1890 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 1700065D16Rik-202ENSMUST00000188975 506 ntTSL 3 BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Gm37444-201ENSMUST00000193605 439 ntBASIC19.59■□□□□ 0.73
Rnf40Q3U319 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 0610040J01Rik-201ENSMUST00000081747 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Dcun1d1-201ENSMUST00000108182 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Unc13a-208ENSMUST00000177517 5654 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
Rnf40Q3U319 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC19.59■□□□□ 0.73
Rnf40Q3U319 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC19.58■□□□□ 0.73
Rnf40Q3U319 Zfp219-204ENSMUST00000226522 2804 ntAPPRIS P2 BASIC19.58■□□□□ 0.73
Rnf40Q3U319 Chka-201ENSMUST00000025760 2319 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
Rnf40Q3U319 Obsl1-202ENSMUST00000113567 5679 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
Rnf40Q3U319 Ing1-207ENSMUST00000211007 2241 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
Rnf40Q3U319 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Camkk2-211ENSMUST00000200109 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Smarcc1-207ENSMUST00000199896 5773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Smarca4-201ENSMUST00000034707 6354 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
Rnf40Q3U319 Sulf2-201ENSMUST00000088086 3927 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf40Q3U319 Dtnb-222ENSMUST00000174479 3689 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf40Q3U319 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Rnf40Q3U319 S1pr5-201ENSMUST00000122088 2500 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
Rnf40Q3U319 Tmem136-202ENSMUST00000213544 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms