Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Mtmr1-202ENSMUST00000114601 4640 ntAPPRIS ALT2 TSL 5 BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Med14-201ENSMUST00000076016 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 B4galt4-205ENSMUST00000114712 2168 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Fam43b-201ENSMUST00000105032 2437 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Lhfp-201ENSMUST00000059562 2108 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Ptchd3Q0EEE2 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Pqlc1-201ENSMUST00000070135 1911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 AA386476-201ENSMUST00000098781 1665 ntBASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Fbxw5-201ENSMUST00000015239 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Hirip3-201ENSMUST00000037248 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Ptchd3Q0EEE2 Fgf11-201ENSMUST00000011285 2534 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Gm9207-201ENSMUST00000198773 1115 ntBASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Fuz-214ENSMUST00000209132 853 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Ptchd3Q0EEE2 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Mfsd4a-202ENSMUST00000112365 1536 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Rgs19-201ENSMUST00000002532 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Snap91-201ENSMUST00000036347 4237 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Gm4553-202ENSMUST00000210925 1044 ntAPPRIS P5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.23■□□□□ 0.51
Ptchd3Q0EEE2 Rock2-201ENSMUST00000020904 7644 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 5330438D12Rik-201ENSMUST00000064101 2229 ntBASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Rrad-201ENSMUST00000034351 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 AC124603.1-201ENSMUST00000223843 308 ntBASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Map1lc3b-204ENSMUST00000181826 2633 ntBASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Plin5-202ENSMUST00000113072 1986 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Ptchd3Q0EEE2 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Timm29-201ENSMUST00000062125 3170 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 D630002J18Rik-201ENSMUST00000181854 1115 ntBASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 1110065P20Rik-206ENSMUST00000185036 1223 ntTSL 2 BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC18.21■□□□□ 0.51
Ptchd3Q0EEE2 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Zfp282-201ENSMUST00000061890 5573 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Kbtbd13-201ENSMUST00000068307 2969 ntAPPRIS P1 BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Ptchd3Q0EEE2 Plekhg3-201ENSMUST00000075249 5138 ntAPPRIS P2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 19.7 ms