Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC17.96■□□□□ 0.47
Msx1P13297 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Tnfaip8-208ENSMUST00000148989 1002 ntAPPRIS P1 TSL 2 BASIC17.96■□□□□ 0.47
Msx1P13297 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Cant1-205ENSMUST00000106289 1600 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
Msx1P13297 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.96■□□□□ 0.47
Msx1P13297 Hoxd13-201ENSMUST00000001872 2483 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msx1P13297 Zfp777-202ENSMUST00000114583 3111 ntAPPRIS P3 TSL 5 BASIC17.95■□□□□ 0.46
Msx1P13297 Gm3807-201ENSMUST00000193520 1168 ntBASIC17.95■□□□□ 0.46
Msx1P13297 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
Msx1P13297 Nlgn2-201ENSMUST00000056484 5003 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msx1P13297 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msx1P13297 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msx1P13297 Kdm1a-203ENSMUST00000116273 3008 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
Msx1P13297 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Metrn-202ENSMUST00000165838 1363 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Tfg-202ENSMUST00000121554 716 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
Msx1P13297 Gm10252-201ENSMUST00000209541 832 ntBASIC17.94■□□□□ 0.46
Msx1P13297 Agfg1-202ENSMUST00000113444 3142 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
Msx1P13297 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Msx1P13297 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Msx1P13297 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
Msx1P13297 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC17.93■□□□□ 0.46
Msx1P13297 Park7-201ENSMUST00000030805 908 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Msx1P13297 Brpf3-201ENSMUST00000004985 5766 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Msx1P13297 Sptbn4-207ENSMUST00000172269 8737 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
Msx1P13297 Tspan5-201ENSMUST00000029800 6653 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Msx1P13297 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC17.93■□□□□ 0.46
Msx1P13297 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Gm8520-201ENSMUST00000186517 868 ntBASIC17.92■□□□□ 0.46
Msx1P13297 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC17.92■□□□□ 0.46
Msx1P13297 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Msx1P13297 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Msx1P13297 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Msx1P13297 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.91■□□□□ 0.46
Msx1P13297 Pthlh-201ENSMUST00000052296 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Gm10571-201ENSMUST00000097869 1638 ntBASIC17.91■□□□□ 0.46
Msx1P13297 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Hist1h4c-201ENSMUST00000102967 820 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Msx1P13297 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC17.91■□□□□ 0.46
Msx1P13297 Smim27-201ENSMUST00000129758 1044 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Msx1P13297 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Msx1P13297 Gm43545-201ENSMUST00000196765 2779 ntBASIC17.91■□□□□ 0.46
Msx1P13297 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Gm22325-201ENSMUST00000158904 308 ntBASIC17.9■□□□□ 0.46
Msx1P13297 Gm37444-201ENSMUST00000193605 439 ntBASIC17.9■□□□□ 0.46
Msx1P13297 Fgf22-203ENSMUST00000219981 1070 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Msx1P13297 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Msx1P13297 Gm42911-201ENSMUST00000199360 1630 ntBASIC17.9■□□□□ 0.46
Msx1P13297 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Gm16764-202ENSMUST00000148931 433 ntTSL 5 BASIC17.89■□□□□ 0.45
Msx1P13297 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC17.89■□□□□ 0.45
Msx1P13297 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC17.89■□□□□ 0.45
Msx1P13297 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Doc2a-201ENSMUST00000064110 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Msx1P13297 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Msx1P13297 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Msx1P13297 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Msx1P13297 Gm16105-201ENSMUST00000156926 697 ntTSL 3 BASIC17.88■□□□□ 0.45
Msx1P13297 Boll-203ENSMUST00000159398 658 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Msx1P13297 Tecr-203ENSMUST00000165740 1120 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Msx1P13297 Prmt1-210ENSMUST00000208829 621 ntTSL 5 BASIC17.88■□□□□ 0.45
Msx1P13297 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Msx1P13297 Ak2-202ENSMUST00000102604 1781 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Msx1P13297 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 56.4 ms