Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
RaraP11416 Csf1-203ENSMUST00000120243 2097 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.87
RaraP11416 Pex11b-202ENSMUST00000118557 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
RaraP11416 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
RaraP11416 Usp21-201ENSMUST00000065941 2219 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Ptges3-201ENSMUST00000052798 2000 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.51■□□□□ 0.87
RaraP11416 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC20.51■□□□□ 0.87
RaraP11416 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC20.51■□□□□ 0.87
RaraP11416 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Fbxo7-202ENSMUST00000117597 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Src-203ENSMUST00000109529 2020 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Zfp821-206ENSMUST00000212964 2033 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Bcl11b-203ENSMUST00000109891 2888 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
RaraP11416 Cacnb3-201ENSMUST00000003442 2819 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 P2ry2-204ENSMUST00000207916 2372 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Adamts18-201ENSMUST00000093113 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Ism1-202ENSMUST00000184404 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Paics-201ENSMUST00000031160 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Pgs1-203ENSMUST00000132676 2863 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
RaraP11416 Slc25a10-201ENSMUST00000026899 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Tlcd1-202ENSMUST00000098545 2897 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Ube4b-202ENSMUST00000103212 5626 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Cxxc1-201ENSMUST00000025444 2618 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC20.49■□□□□ 0.87
RaraP11416 Cox5b-204ENSMUST00000193210 865 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Gm13241-201ENSMUST00000094493 780 ntBASIC20.49■□□□□ 0.87
RaraP11416 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
RaraP11416 Cyb5d2-201ENSMUST00000079681 2393 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
RaraP11416 Tpra1-201ENSMUST00000055022 1820 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
RaraP11416 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC20.48■□□□□ 0.87
RaraP11416 Cnn3-201ENSMUST00000029773 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC20.48■□□□□ 0.87
RaraP11416 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC20.48■□□□□ 0.87
RaraP11416 Gfra1-208ENSMUST00000152507 1937 ntAPPRIS P1 TSL 5 BASIC20.48■□□□□ 0.87
RaraP11416 Gm26694-201ENSMUST00000180868 1902 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Rad1-201ENSMUST00000022856 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
RaraP11416 Syce3-201ENSMUST00000109314 448 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RaraP11416 Smad6-203ENSMUST00000179458 273 ntBASIC20.47■□□□□ 0.87
RaraP11416 Mir7075-201ENSMUST00000184187 82 ntBASIC20.47■□□□□ 0.87
RaraP11416 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RaraP11416 Ndufaf1-201ENSMUST00000028768 1451 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
RaraP11416 Ddah2-201ENSMUST00000007255 1342 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
RaraP11416 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RaraP11416 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
RaraP11416 Gm43034-201ENSMUST00000198678 1364 ntBASIC20.46■□□□□ 0.87
RaraP11416 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Eno1-202ENSMUST00000080926 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Lrch3-208ENSMUST00000165616 1875 ntTSL 5 BASIC20.46■□□□□ 0.87
RaraP11416 Oxsr1-201ENSMUST00000040853 4647 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Srp19-202ENSMUST00000119329 613 ntTSL 2 BASIC20.46■□□□□ 0.87
RaraP11416 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC20.46■□□□□ 0.87
RaraP11416 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RaraP11416 Magi2-203ENSMUST00000115267 4478 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Ica1-203ENSMUST00000115519 1706 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
RaraP11416 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 Eid2b-201ENSMUST00000094651 1751 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
RaraP11416 Gm15853-202ENSMUST00000195518 2041 ntBASIC20.46■□□□□ 0.87
RaraP11416 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC20.46■□□□□ 0.87
RaraP11416 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
RaraP11416 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC20.45■□□□□ 0.86
RaraP11416 Khdc3-201ENSMUST00000034737 1681 ntAPPRIS P3 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Nrxn2-205ENSMUST00000113462 6667 ntAPPRIS P4 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Memo1-201ENSMUST00000078459 1513 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Eif5a-209ENSMUST00000108612 1259 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC20.45■□□□□ 0.86
RaraP11416 D11Wsu47e-202ENSMUST00000106621 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Hes3-201ENSMUST00000094438 1829 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.45■□□□□ 0.86
RaraP11416 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
RaraP11416 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
RaraP11416 Ripk2-201ENSMUST00000037035 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
RaraP11416 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC20.44■□□□□ 0.86
RaraP11416 Pwwp2b-201ENSMUST00000093993 3057 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
Retrieved 100 of 76,532 protein–RNA pairs in 38.6 ms