Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col5a1O88207 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col5a1O88207 Nab2-201ENSMUST00000026469 2582 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col5a1O88207 AC131586.2-201ENSMUST00000228370 1512 ntBASIC17.33■□□□□ 0.36
Col5a1O88207 Aunip-201ENSMUST00000105866 1275 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col5a1O88207 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
Col5a1O88207 Vgf-202ENSMUST00000186451 2277 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
Col5a1O88207 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
Col5a1O88207 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
Col5a1O88207 Cdo1-201ENSMUST00000035804 1530 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col5a1O88207 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC17.32■□□□□ 0.36
Col5a1O88207 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col5a1O88207 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
Col5a1O88207 Skor2-201ENSMUST00000166956 3141 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col5a1O88207 Gm12896-201ENSMUST00000118430 226 ntBASIC17.32■□□□□ 0.36
Col5a1O88207 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.32■□□□□ 0.36
Col5a1O88207 Yif1b-201ENSMUST00000032809 1111 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
Col5a1O88207 Cav2-201ENSMUST00000000058 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Foxe1-201ENSMUST00000095097 2804 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
Col5a1O88207 Dpf1-201ENSMUST00000049977 2309 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.31■□□□□ 0.36
Col5a1O88207 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Nat8-201ENSMUST00000032073 1123 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.31■□□□□ 0.36
Col5a1O88207 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC17.31■□□□□ 0.36
Col5a1O88207 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
Col5a1O88207 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC17.31■□□□□ 0.36
Col5a1O88207 Smn1-201ENSMUST00000022147 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col5a1O88207 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Adrb1-201ENSMUST00000038949 2491 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
Col5a1O88207 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.3■□□□□ 0.36
Col5a1O88207 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col5a1O88207 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col5a1O88207 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC17.29■□□□□ 0.36
Col5a1O88207 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC17.29■□□□□ 0.36
Col5a1O88207 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col5a1O88207 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col5a1O88207 Gm37563-201ENSMUST00000192580 1513 ntBASIC17.29■□□□□ 0.36
Col5a1O88207 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col5a1O88207 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col5a1O88207 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col5a1O88207 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.29■□□□□ 0.36
Col5a1O88207 Cenps-202ENSMUST00000105695 544 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC17.28■□□□□ 0.36
Col5a1O88207 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.28■□□□□ 0.36
Col5a1O88207 AC153881.1-201ENSMUST00000214448 284 ntBASIC17.28■□□□□ 0.36
Col5a1O88207 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col5a1O88207 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Slc9a2-203ENSMUST00000192345 2507 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC17.28■□□□□ 0.36
Col5a1O88207 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.28■□□□□ 0.36
Col5a1O88207 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 4933428G20Rik-201ENSMUST00000056955 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.28■□□□□ 0.36
Col5a1O88207 0610010K14Rik-207ENSMUST00000108577 659 ntTSL 5 BASIC17.28■□□□□ 0.36
Col5a1O88207 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col5a1O88207 Gm9987-201ENSMUST00000069768 567 ntBASIC17.28■□□□□ 0.36
Col5a1O88207 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col5a1O88207 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col5a1O88207 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.27■□□□□ 0.36
Col5a1O88207 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col5a1O88207 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col5a1O88207 Stx3-202ENSMUST00000069285 2810 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col5a1O88207 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC17.27■□□□□ 0.35
Col5a1O88207 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col5a1O88207 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col5a1O88207 Foxg1-201ENSMUST00000021333 2941 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col5a1O88207 Ccdc107-202ENSMUST00000107922 865 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
Col5a1O88207 Gm6270-201ENSMUST00000132731 559 ntTSL 5 BASIC17.26■□□□□ 0.35
Col5a1O88207 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
Col5a1O88207 Gm10698-201ENSMUST00000182663 604 ntBASIC17.26■□□□□ 0.35
Col5a1O88207 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC17.26■□□□□ 0.35
Col5a1O88207 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col5a1O88207 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col5a1O88207 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col5a1O88207 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Col5a1O88207 Nt5c-201ENSMUST00000021082 858 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col5a1O88207 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Col5a1O88207 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col5a1O88207 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 20.4 ms