Protein–RNA interactions for Protein: O55017

Cacna1b, Voltage-dependent N-type calcium channel subunit alpha-1B, mousemouse

Predictions only

Length 2,327 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cacna1bO55017 Clta-203ENSMUST00000107847 1121 ntTSL 5 BASIC18.34■□□□□ 0.53
Cacna1bO55017 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC18.34■□□□□ 0.53
Cacna1bO55017 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cacna1bO55017 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cacna1bO55017 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cacna1bO55017 Zfp523-201ENSMUST00000002318 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cacna1bO55017 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC18.34■□□□□ 0.53
Cacna1bO55017 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Cacna1bO55017 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC18.34■□□□□ 0.53
Cacna1bO55017 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.33■□□□□ 0.53
Cacna1bO55017 Stard3-201ENSMUST00000018311 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC18.33■□□□□ 0.53
Cacna1bO55017 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Gm21596-201ENSMUST00000178049 1316 ntBASIC18.33■□□□□ 0.53
Cacna1bO55017 Arhgef26-201ENSMUST00000079300 5638 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
Cacna1bO55017 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Nr5a1-202ENSMUST00000112883 2994 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Gm44549-201ENSMUST00000208351 577 ntBASIC18.33■□□□□ 0.52
Cacna1bO55017 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC18.33■□□□□ 0.52
Cacna1bO55017 AC163280.1-201ENSMUST00000228194 1100 ntBASIC18.33■□□□□ 0.52
Cacna1bO55017 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
Cacna1bO55017 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
Cacna1bO55017 Ost4-201ENSMUST00000132034 576 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Cenpb-201ENSMUST00000089510 4886 ntAPPRIS P1 BASIC18.32■□□□□ 0.52
Cacna1bO55017 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
Cacna1bO55017 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC18.32■□□□□ 0.52
Cacna1bO55017 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Arfip2-212ENSMUST00000209550 1141 ntAPPRIS ALT1 TSL 5 BASIC18.31■□□□□ 0.52
Cacna1bO55017 Arfip2-214ENSMUST00000210911 938 ntTSL 5 BASIC18.31■□□□□ 0.52
Cacna1bO55017 AC153881.2-201ENSMUST00000214877 204 ntBASIC18.31■□□□□ 0.52
Cacna1bO55017 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC18.31■□□□□ 0.52
Cacna1bO55017 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Pkd2-201ENSMUST00000086831 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
Cacna1bO55017 Nrn1-203ENSMUST00000223611 1443 ntBASIC18.31■□□□□ 0.52
Cacna1bO55017 Gm16759-201ENSMUST00000126238 1393 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC18.31■□□□□ 0.52
Cacna1bO55017 Sdr39u1-201ENSMUST00000111325 1255 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Cacna1bO55017 Tmem263-201ENSMUST00000095383 3616 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC18.3■□□□□ 0.52
Cacna1bO55017 Dcxr-201ENSMUST00000026144 892 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC18.3■□□□□ 0.52
Cacna1bO55017 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
Cacna1bO55017 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm13158-201ENSMUST00000122007 736 ntBASIC18.29■□□□□ 0.52
Cacna1bO55017 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm20390-201ENSMUST00000170303 991 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.29■□□□□ 0.52
Cacna1bO55017 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm10167-201ENSMUST00000150411 1479 ntBASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 Crebbp-201ENSMUST00000023165 10820 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 Rps5-202ENSMUST00000108539 794 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
Cacna1bO55017 H2-K2-201ENSMUST00000174250 1049 ntBASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm10819-201ENSMUST00000099988 561 ntBASIC18.29■□□□□ 0.52
Cacna1bO55017 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 Gm20100-201ENSMUST00000209418 2272 ntBASIC18.29■□□□□ 0.52
Cacna1bO55017 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
Cacna1bO55017 Ltbp3-201ENSMUST00000081496 5190 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cacna1bO55017 Pou3f1-201ENSMUST00000053491 3849 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Gfi1-202ENSMUST00000065478 2639 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cacna1bO55017 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cacna1bO55017 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cacna1bO55017 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Selenos-201ENSMUST00000101801 1191 ntAPPRIS P2 TSL 1 (best) BASIC18.28■□□□□ 0.52
Cacna1bO55017 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
Cacna1bO55017 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
Cacna1bO55017 Pdlim5-202ENSMUST00000058626 873 ntTSL 5 BASIC18.28■□□□□ 0.52
Retrieved 100 of 76,532 protein–RNA pairs in 26.8 ms