Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Chd3B1AR17 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chd3B1AR17 Clta-201ENSMUST00000107845 1031 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
Chd3B1AR17 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Slc7a6os-201ENSMUST00000035925 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
Chd3B1AR17 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Ube2b-202ENSMUST00000109086 585 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
Chd3B1AR17 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC18.65■□□□□ 0.58
Chd3B1AR17 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC18.65■□□□□ 0.58
Chd3B1AR17 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Chd3B1AR17 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
Chd3B1AR17 Gm45640-201ENSMUST00000210665 1896 ntBASIC18.64■□□□□ 0.58
Chd3B1AR17 Dusp26-205ENSMUST00000170204 1627 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
Chd3B1AR17 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Acot8-202ENSMUST00000103094 1152 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Acot8-201ENSMUST00000017451 1055 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC18.64■□□□□ 0.57
Chd3B1AR17 Dstn-201ENSMUST00000103172 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Fam19a5-201ENSMUST00000068088 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Grin2d-203ENSMUST00000211713 5244 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
Chd3B1AR17 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
Chd3B1AR17 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Psmd3-201ENSMUST00000017365 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC18.63■□□□□ 0.57
Chd3B1AR17 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC18.63■□□□□ 0.57
Chd3B1AR17 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Acot7-201ENSMUST00000030779 1425 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
Chd3B1AR17 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Mrps10-203ENSMUST00000119945 1018 ntAPPRIS P4 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 2300009A05Rik-201ENSMUST00000168665 595 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 AC122769.4-201ENSMUST00000228166 901 ntBASIC18.62■□□□□ 0.57
Chd3B1AR17 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
Chd3B1AR17 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.62■□□□□ 0.57
Chd3B1AR17 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
Chd3B1AR17 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
Chd3B1AR17 1700101I19Rik-202ENSMUST00000186712 510 ntBASIC18.62■□□□□ 0.57
Chd3B1AR17 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
Chd3B1AR17 Ppm1m-203ENSMUST00000140761 1846 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Anks3-201ENSMUST00000023157 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Vkorc1-202ENSMUST00000119922 387 ntTSL 3 BASIC18.61■□□□□ 0.57
Chd3B1AR17 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Cldn5-201ENSMUST00000043577 1414 ntAPPRIS P1 BASIC18.61■□□□□ 0.57
Chd3B1AR17 D030062O11Rik-201ENSMUST00000192660 2806 ntBASIC18.61■□□□□ 0.57
Chd3B1AR17 Gpc3-202ENSMUST00000114857 1880 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Nat9-201ENSMUST00000103038 1143 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Gm5408-201ENSMUST00000197998 747 ntBASIC18.61■□□□□ 0.57
Chd3B1AR17 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC18.61■□□□□ 0.57
Chd3B1AR17 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC18.61■□□□□ 0.57
Chd3B1AR17 BC107364-201ENSMUST00000093126 1159 ntAPPRIS P4 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 BC107364-202ENSMUST00000098841 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.61■□□□□ 0.57
Chd3B1AR17 Gja3-201ENSMUST00000061614 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chd3B1AR17 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chd3B1AR17 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC18.6■□□□□ 0.57
Chd3B1AR17 Serbp1-211ENSMUST00000204293 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chd3B1AR17 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Chd3B1AR17 Golph3-202ENSMUST00000226517 2359 ntBASIC18.6■□□□□ 0.57
Chd3B1AR17 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC18.6■□□□□ 0.57
Chd3B1AR17 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
Chd3B1AR17 Gm11627-202ENSMUST00000107081 818 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
Chd3B1AR17 Rex1bd-206ENSMUST00000136913 671 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
Chd3B1AR17 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC18.59■□□□□ 0.57
Chd3B1AR17 Gm44238-201ENSMUST00000203300 353 ntTSL 3 BASIC18.59■□□□□ 0.57
Chd3B1AR17 Timp4-202ENSMUST00000205131 945 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Chd3B1AR17 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chd3B1AR17 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
Chd3B1AR17 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Chd3B1AR17 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
Chd3B1AR17 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Chd3B1AR17 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
Chd3B1AR17 Fam3c-205ENSMUST00000165576 2826 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Chd3B1AR17 1110004F10Rik-202ENSMUST00000106607 1153 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
Chd3B1AR17 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
Chd3B1AR17 Ndufa5-201ENSMUST00000023851 875 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
Retrieved 100 of 76,532 protein–RNA pairs in 21.2 ms