Protein–RNA interactions for Protein: Q9ERG0

Lima1, LIM domain and actin-binding protein 1, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lima1Q9ERG0 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lima1Q9ERG0 Irx3-201ENSMUST00000093312 2610 ntAPPRIS P4 TSL 1 (best) BASIC18.76■□□□□ 0.59
Lima1Q9ERG0 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Lima1Q9ERG0 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Spata2l-202ENSMUST00000166768 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Tmem120b-202ENSMUST00000111619 1256 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Gm43759-201ENSMUST00000196925 1261 ntBASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Slc35a2-209ENSMUST00000208397 1374 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Wtap-205ENSMUST00000160781 2442 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Syndig1-202ENSMUST00000109935 2050 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Igsf8-202ENSMUST00000085912 2182 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Lima1Q9ERG0 Foxo3-202ENSMUST00000105501 1316 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Vat1-201ENSMUST00000040430 2766 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Herpud2-201ENSMUST00000008573 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Rnf44-208ENSMUST00000128257 1689 ntTSL 5 BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Gm9847-201ENSMUST00000052528 599 ntBASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Tmem121b-201ENSMUST00000178687 4869 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC18.74■□□□□ 0.59
Lima1Q9ERG0 Galnt9-201ENSMUST00000040001 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Gm9885-202ENSMUST00000186234 2209 ntBASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Cckbr-201ENSMUST00000033189 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 0610010K14Rik-209ENSMUST00000108579 667 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Gm43182-201ENSMUST00000199476 2528 ntBASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Gm27045-201ENSMUST00000182145 1402 ntBASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Fam78b-205ENSMUST00000165874 4986 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Lima1Q9ERG0 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Gm37352-201ENSMUST00000193908 2181 ntBASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Rnf112-201ENSMUST00000054927 3086 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Cnih3-202ENSMUST00000161880 1995 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Lima1Q9ERG0 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 6330562C20Rik-201ENSMUST00000098867 784 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Ddx41-201ENSMUST00000021956 2205 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Dmtn-210ENSMUST00000228824 2377 ntBASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Lima1Q9ERG0 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 AA386476-201ENSMUST00000098781 1665 ntBASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Trim47-202ENSMUST00000106441 2192 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Adam22-205ENSMUST00000115385 2318 ntTSL 2 BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Runx2-204ENSMUST00000159943 2316 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Siglec15-201ENSMUST00000170760 1156 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Serbp1-212ENSMUST00000204294 717 ntTSL 5 BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Hebp2-202ENSMUST00000213153 968 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Alkbh5-201ENSMUST00000044250 5730 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Lima1Q9ERG0 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Fiz1-202ENSMUST00000165320 2653 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Cdca4-201ENSMUST00000062092 2425 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Lima1Q9ERG0 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms