Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Rabgap1l-201ENSMUST00000028049 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Lsm1Q8VC85 Sema6d-202ENSMUST00000076335 6276 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Golga7b-202ENSMUST00000122375 2836 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC18.24■□□□□ 0.51
Lsm1Q8VC85 Bag1-202ENSMUST00000108089 1336 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Bnc2-214ENSMUST00000176612 3963 ntTSL 5 BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Lsm1Q8VC85 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Ndfip2-206ENSMUST00000181969 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Lsm1Q8VC85 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Sema6d-204ENSMUST00000078621 6372 ntTSL 5 BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 4930539J05Rik-202ENSMUST00000182865 511 ntTSL 2 BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Gm13241-201ENSMUST00000094493 780 ntBASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC18.21■□□□□ 0.51
Lsm1Q8VC85 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Nat14-204ENSMUST00000207687 1415 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Mtg1-201ENSMUST00000036977 1595 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC18.2■□□□□ 0.5
Lsm1Q8VC85 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Gm10382-201ENSMUST00000100700 1233 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 9530036O11Rik-201ENSMUST00000180878 876 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Hagh-201ENSMUST00000024974 1101 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Mfsd14a-201ENSMUST00000029570 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Pxk-201ENSMUST00000036682 2812 ntAPPRIS ALT2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Peli2-201ENSMUST00000073150 5900 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
Lsm1Q8VC85 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Ntn5-201ENSMUST00000107742 1574 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Gls2-201ENSMUST00000044776 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Mgarp-202ENSMUST00000108046 1409 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Fbxl15-202ENSMUST00000177667 1243 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Gm3448-202ENSMUST00000097400 747 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Mmadhc-201ENSMUST00000102769 1342 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Cdkl3-208ENSMUST00000109081 2063 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Lsm1Q8VC85 Cyp4f15-204ENSMUST00000168171 2168 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lsm1Q8VC85 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Lsm1Q8VC85 Zc3h14-202ENSMUST00000057000 3046 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Lsm1Q8VC85 Gm20163-202ENSMUST00000212288 989 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 27.5 ms