Protein–RNA interactions for Protein: Q8R1T1

Chmp7, Charged multivesicular body protein 7, mousemouse

Predictions only

Length 451 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chmp7Q8R1T1 Mvb12a-201ENSMUST00000034272 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Arrb2-203ENSMUST00000102563 1352 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 AI314180-201ENSMUST00000055822 1478 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Lgr4-201ENSMUST00000046548 5060 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
Chmp7Q8R1T1 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Ccnd3-201ENSMUST00000037333 1999 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Thra-201ENSMUST00000064187 2452 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Calml3-201ENSMUST00000077698 1421 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Prr29-201ENSMUST00000009354 1112 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC24.48■■□□□ 1.51
Chmp7Q8R1T1 Fam20b-201ENSMUST00000086153 4414 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Vgll2-202ENSMUST00000163017 1650 ntAPPRIS P3 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Inpp5a-201ENSMUST00000026550 2774 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Rab7-206ENSMUST00000203674 424 ntTSL 5 BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Mrpl10-202ENSMUST00000054252 744 ntTSL 5 BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Chmp7Q8R1T1 Znrf3-201ENSMUST00000109867 6311 ntAPPRIS P3 TSL 5 BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Rgs19-207ENSMUST00000108779 642 ntTSL 5 BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Hist2h2ac-201ENSMUST00000090782 520 ntAPPRIS P1 BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Mcmbp-202ENSMUST00000119081 2347 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Kcnn2-203ENSMUST00000169783 1625 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Rapgef1-201ENSMUST00000091146 6212 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
Chmp7Q8R1T1 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Lrrc4b-201ENSMUST00000058667 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Sephs2-201ENSMUST00000082428 2177 ntAPPRIS P1 BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Cpne2-202ENSMUST00000109537 2121 ntAPPRIS ALT2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Npm3-ps1-201ENSMUST00000119728 528 ntBASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Vps51-209ENSMUST00000160590 840 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Ramp1-203ENSMUST00000188475 711 ntTSL 3 BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Gm10252-201ENSMUST00000209541 832 ntBASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Npm3-201ENSMUST00000070215 888 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Pou2f2-210ENSMUST00000176408 1697 ntTSL 5 BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Hat1-202ENSMUST00000112122 1899 ntAPPRIS ALT2 TSL 5 BASIC24.45■■□□□ 1.5
Chmp7Q8R1T1 Ewsr1-205ENSMUST00000102930 2174 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Arrb2-202ENSMUST00000084954 1732 ntTSL 5 BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Gm26971-201ENSMUST00000182423 1072 ntBASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Gm10812-201ENSMUST00000099864 546 ntBASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Chmp7Q8R1T1 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Chmp7Q8R1T1 A230083G16Rik-201ENSMUST00000069553 991 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Chmp7Q8R1T1 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
Chmp7Q8R1T1 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Chmp7Q8R1T1 Slc9a3r2-201ENSMUST00000002572 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Chmp7Q8R1T1 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Homer1-207ENSMUST00000109494 2468 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Mgat5b-201ENSMUST00000103027 4258 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Hfe2-201ENSMUST00000049208 2028 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Rbm7-201ENSMUST00000170000 1773 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Chmp7Q8R1T1 Mprip-204ENSMUST00000116371 8766 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Cox18-201ENSMUST00000048363 1333 ntAPPRIS P3 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 1700095J03Rik-201ENSMUST00000143715 1808 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Gm15556-201ENSMUST00000122904 663 ntTSL 5 BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Chmp7Q8R1T1 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Ptar1-201ENSMUST00000099560 2064 ntAPPRIS P1 TSL 5 BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Sox15-201ENSMUST00000047373 861 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Rps23-201ENSMUST00000051955 937 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Rps16-201ENSMUST00000082134 1109 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Cacna2d2-205ENSMUST00000168532 5807 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Chmp7Q8R1T1 Cbx4-201ENSMUST00000026665 5179 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.5
Chmp7Q8R1T1 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Chmp7Q8R1T1 Homer3-206ENSMUST00000140212 2608 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
Chmp7Q8R1T1 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC24.39■■□□□ 1.5
Chmp7Q8R1T1 a-202ENSMUST00000109697 705 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.49
Chmp7Q8R1T1 Alcam-206ENSMUST00000168071 878 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 22.9 ms