Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 AC154649.1-201ENSMUST00000227392 384 ntBASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 6330403L08Rik-202ENSMUST00000187923 5522 ntBASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Car11-201ENSMUST00000003360 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Rasa1-201ENSMUST00000109552 4563 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Gm45736-201ENSMUST00000210592 1352 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Kctd20-204ENSMUST00000122163 2423 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Senp6-201ENSMUST00000037484 5111 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Col6a6Q8C6K9 Tnnt2-202ENSMUST00000112085 1076 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Tnnt2-203ENSMUST00000112086 1094 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Tnnt2-204ENSMUST00000112087 1112 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Atp5c1-203ENSMUST00000114897 1166 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 2900072N19Rik-201ENSMUST00000123840 806 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Tnnt2-206ENSMUST00000178854 1076 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Tnnt2-211ENSMUST00000189355 1112 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Col6a6Q8C6K9 Rmnd5a-201ENSMUST00000002292 6165 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Hmga1-202ENSMUST00000117254 1328 ntAPPRIS P3 TSL 2 BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Gm20100-201ENSMUST00000209418 2272 ntBASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Sox1-201ENSMUST00000180353 4832 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Mir1199-201ENSMUST00000117015 119 ntBASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Gm11643-201ENSMUST00000119578 864 ntBASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Atp5c1-201ENSMUST00000026887 1060 ntAPPRIS ALT1 TSL 5 BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Dmtn-209ENSMUST00000228295 2572 ntBASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Acss2-203ENSMUST00000103142 2145 ntTSL 5 BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Col6a6Q8C6K9 Calu-208ENSMUST00000173694 611 ntTSL 5 BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Grin2d-201ENSMUST00000002848 5431 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Esyt2-201ENSMUST00000100986 5560 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Klk9-201ENSMUST00000005891 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
Col6a6Q8C6K9 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Chd5-205ENSMUST00000164662 9375 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 AL672049.1-201ENSMUST00000197943 91 ntBASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Cox8a-201ENSMUST00000039758 545 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Dhrs7-201ENSMUST00000021512 1385 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Noc2l-202ENSMUST00000179886 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Crybb1-201ENSMUST00000031286 882 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Gm9987-201ENSMUST00000069768 567 ntBASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Phf2-201ENSMUST00000035540 5494 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
Col6a6Q8C6K9 Efcc1-201ENSMUST00000032132 2729 ntAPPRIS ALT2 TSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Gm27032-201ENSMUST00000183124 1116 ntBASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Cic-202ENSMUST00000163320 6096 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Cic-201ENSMUST00000005578 6099 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 4930518J20Rik-201ENSMUST00000195064 1478 ntBASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Arl5a-201ENSMUST00000036541 5239 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Nars2-202ENSMUST00000107159 1777 ntTSL 5 BASIC17.17■□□□□ 0.34
Col6a6Q8C6K9 Macrod2-207ENSMUST00000110067 4730 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 CT010444.2-201ENSMUST00000217877 1629 ntBASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Gm10698-201ENSMUST00000182663 604 ntBASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Tmed3-201ENSMUST00000058488 1346 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Lgr4-202ENSMUST00000111037 4988 ntTSL 5 BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Gnpnat1-201ENSMUST00000046191 2788 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Ubl4a-206ENSMUST00000155676 2442 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
Col6a6Q8C6K9 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC17.16■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 23.1 ms