Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Ift57-201ENSMUST00000046777 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 E4f1-201ENSMUST00000056032 2574 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Ccnd3-218ENSMUST00000183177 2060 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Trim47Q8C0E3 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Trim47Q8C0E3 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC21.14■□□□□ 0.98
Trim47Q8C0E3 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim47Q8C0E3 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
Trim47Q8C0E3 Rell2-204ENSMUST00000163591 1057 ntTSL 5 BASIC21.14■□□□□ 0.97
Trim47Q8C0E3 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim47Q8C0E3 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
Trim47Q8C0E3 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
Trim47Q8C0E3 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Hnrnpf-202ENSMUST00000163168 2401 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Gm15155-201ENSMUST00000112542 1009 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Gm6420-201ENSMUST00000193885 723 ntBASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
Trim47Q8C0E3 Gm27032-201ENSMUST00000183124 1116 ntBASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Hsf1-204ENSMUST00000226872 2104 ntBASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Slc35a2-203ENSMUST00000115663 1527 ntAPPRIS P4 TSL 2 BASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
Trim47Q8C0E3 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Nhlh1-201ENSMUST00000059794 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Oxld1-201ENSMUST00000044007 813 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Trim47Q8C0E3 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Adgrv1-211ENSMUST00000146749 1592 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Nup153-201ENSMUST00000021803 6109 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 A830035A12Rik-201ENSMUST00000147445 861 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
Trim47Q8C0E3 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Atraid-201ENSMUST00000013766 966 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Pop5-201ENSMUST00000081497 1025 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Gm43545-201ENSMUST00000196765 2779 ntBASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Kif27-203ENSMUST00000225388 5121 ntAPPRIS P1 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
Trim47Q8C0E3 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Lrfn4-201ENSMUST00000053597 3194 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Nespas-201ENSMUST00000143738 1083 ntBASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Ccdc85b-201ENSMUST00000179549 609 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 AC123857.1-201ENSMUST00000181053 2312 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
Trim47Q8C0E3 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim47Q8C0E3 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim47Q8C0E3 Pnck-202ENSMUST00000114472 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
Trim47Q8C0E3 Gm10655-201ENSMUST00000098658 1397 ntBASIC21.08■□□□□ 0.96
Trim47Q8C0E3 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
Trim47Q8C0E3 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms