Protein–RNA interactions for Protein: Q8C006

Trim35, Tripartite motif-containing protein 35, mousemouse

Predictions only

Length 501 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim35Q8C006 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim35Q8C006 Gm21168-201ENSMUST00000199646 1096 ntBASIC19.38■□□□□ 0.69
Trim35Q8C006 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim35Q8C006 CT030159.3-201ENSMUST00000222936 1481 ntTSL 5 BASIC19.38■□□□□ 0.69
Trim35Q8C006 Tomm40-201ENSMUST00000032555 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim35Q8C006 Lrfn1-201ENSMUST00000055110 1479 ntAPPRIS P3 TSL 5 BASIC19.38■□□□□ 0.69
Trim35Q8C006 Mtmr9-201ENSMUST00000058679 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
Trim35Q8C006 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC19.37■□□□□ 0.69
Trim35Q8C006 Matn4-203ENSMUST00000109358 2056 ntTSL 5 BASIC19.37■□□□□ 0.69
Trim35Q8C006 Pbx1-206ENSMUST00000176790 1828 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Pold2-201ENSMUST00000102922 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Krcc1-201ENSMUST00000080949 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Crisp4-201ENSMUST00000026876 1252 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Cox6a1-201ENSMUST00000040154 571 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Hgsnat-201ENSMUST00000037609 2694 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
Trim35Q8C006 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Magi3-203ENSMUST00000122303 3827 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Ralgps2-205ENSMUST00000185198 2229 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Gm43908-201ENSMUST00000205074 1472 ntBASIC19.36■□□□□ 0.69
Trim35Q8C006 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 E2f1-202ENSMUST00000103145 2732 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Gse1-202ENSMUST00000118136 4492 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC19.36■□□□□ 0.69
Trim35Q8C006 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
Trim35Q8C006 Gm44387-201ENSMUST00000196298 145 ntBASIC19.36■□□□□ 0.69
Trim35Q8C006 AC164441.1-202ENSMUST00000223430 442 ntTSL 2 BASIC19.36■□□□□ 0.69
Trim35Q8C006 CT025642.1-201ENSMUST00000224734 1219 ntBASIC19.36■□□□□ 0.69
Trim35Q8C006 Fdx1-201ENSMUST00000034552 875 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
Trim35Q8C006 Abcc5-203ENSMUST00000096199 1136 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Trim35Q8C006 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Fmnl2-203ENSMUST00000090952 5414 ntAPPRIS P1 TSL 5 BASIC19.35■□□□□ 0.69
Trim35Q8C006 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC19.35■□□□□ 0.69
Trim35Q8C006 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Gm12467-201ENSMUST00000117625 745 ntBASIC19.35■□□□□ 0.69
Trim35Q8C006 Gm20614-201ENSMUST00000177106 632 ntBASIC19.35■□□□□ 0.69
Trim35Q8C006 Mir6236-201ENSMUST00000184437 123 ntBASIC19.35■□□□□ 0.69
Trim35Q8C006 Eloc-207ENSMUST00000187910 620 ntTSL 2 BASIC19.35■□□□□ 0.69
Trim35Q8C006 Gm1673-201ENSMUST00000094869 477 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Gm10209-201ENSMUST00000203397 1607 ntBASIC19.35■□□□□ 0.69
Trim35Q8C006 Pycr2-201ENSMUST00000027802 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Aktip-202ENSMUST00000120213 2200 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
Trim35Q8C006 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Rhobtb3-201ENSMUST00000022078 4980 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Cdk5rap1-202ENSMUST00000109730 1227 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 4930535I16Rik-201ENSMUST00000181410 519 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Trim35Q8C006 Flvcr1-202ENSMUST00000191946 1216 ntBASIC19.34■□□□□ 0.69
Trim35Q8C006 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 4930442H23Rik-201ENSMUST00000056086 1245 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
Trim35Q8C006 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
Trim35Q8C006 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim35Q8C006 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim35Q8C006 Bag5-202ENSMUST00000160576 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim35Q8C006 Stx2-201ENSMUST00000031378 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim35Q8C006 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim35Q8C006 Ttyh3-201ENSMUST00000042661 4658 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
Trim35Q8C006 1700016H13Rik-203ENSMUST00000120108 797 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
Trim35Q8C006 4930519A11Rik-202ENSMUST00000221053 667 ntTSL 3 BASIC19.33■□□□□ 0.68
Trim35Q8C006 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
Trim35Q8C006 Arhgap27-202ENSMUST00000092557 1504 ntTSL 2 BASIC19.33■□□□□ 0.68
Trim35Q8C006 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim35Q8C006 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC19.33■□□□□ 0.68
Trim35Q8C006 Jph1-201ENSMUST00000038382 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
Trim35Q8C006 Rnf8-201ENSMUST00000024817 2077 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Sh3gl1-201ENSMUST00000003268 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC19.32■□□□□ 0.68
Trim35Q8C006 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC19.32■□□□□ 0.68
Trim35Q8C006 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC19.32■□□□□ 0.68
Trim35Q8C006 Gm43066-201ENSMUST00000199589 1260 ntBASIC19.32■□□□□ 0.68
Trim35Q8C006 Krtap5-4-201ENSMUST00000061403 1046 ntAPPRIS P1 BASIC19.32■□□□□ 0.68
Trim35Q8C006 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
Trim35Q8C006 Atrnl1-201ENSMUST00000077282 6581 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Trim3-203ENSMUST00000106791 2466 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Prkar1b-201ENSMUST00000026973 2637 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Csnk1e-203ENSMUST00000122044 3174 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Lig3-204ENSMUST00000131537 1782 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Lig3-209ENSMUST00000173009 1785 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Trim35Q8C006 Rhbdf1-201ENSMUST00000020524 2946 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Trim35Q8C006 Ttc9-202ENSMUST00000218362 4754 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms