Protein–RNA interactions for Protein: Q811S7

Ubp1, Upstream-binding protein 1, mousemouse

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ubp1Q811S7 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC18.73■□□□□ 0.59
Ubp1Q811S7 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Ankle2-201ENSMUST00000031474 5215 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
Ubp1Q811S7 Slc35d3-201ENSMUST00000059805 2630 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.72■□□□□ 0.59
Ubp1Q811S7 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Reep4-203ENSMUST00000226563 1444 ntBASIC18.72■□□□□ 0.59
Ubp1Q811S7 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Fam117b-201ENSMUST00000036540 5532 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Ubp1Q811S7 Supv3l1-201ENSMUST00000020273 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Vax2os-202ENSMUST00000150233 595 ntTSL 3 BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Gpr3-201ENSMUST00000052090 1116 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Mmp15-201ENSMUST00000034243 5135 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Tmem164-201ENSMUST00000087333 5149 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
Ubp1Q811S7 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC18.7■□□□□ 0.58
Ubp1Q811S7 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ubp1Q811S7 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Gm42778-201ENSMUST00000199644 553 ntBASIC18.7■□□□□ 0.58
Ubp1Q811S7 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Prmt8-201ENSMUST00000032500 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Ubp1Q811S7 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 4930444P10Rik-203ENSMUST00000151004 1001 ntAPPRIS P2 TSL 3 BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC18.69■□□□□ 0.58
Ubp1Q811S7 Emc9-201ENSMUST00000022828 855 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Gm26995-201ENSMUST00000182216 1306 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Map3k9-201ENSMUST00000035987 4564 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Sft2d3-201ENSMUST00000054984 2810 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
Ubp1Q811S7 Mylip-201ENSMUST00000038275 3065 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC18.68■□□□□ 0.58
Ubp1Q811S7 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ubp1Q811S7 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Abhd13-202ENSMUST00000139793 5191 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Gm38205-201ENSMUST00000192243 258 ntBASIC18.68■□□□□ 0.58
Ubp1Q811S7 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Ubp1Q811S7 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ubp1Q811S7 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
Ubp1Q811S7 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC18.67■□□□□ 0.58
Ubp1Q811S7 Gm13067-201ENSMUST00000134236 404 ntTSL 5 BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Gm42642-201ENSMUST00000200683 355 ntBASIC18.67■□□□□ 0.58
Ubp1Q811S7 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
Ubp1Q811S7 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Gm7860-201ENSMUST00000121190 879 ntBASIC18.66■□□□□ 0.58
Ubp1Q811S7 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Gm8495-201ENSMUST00000188740 694 ntBASIC18.66■□□□□ 0.58
Ubp1Q811S7 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Ubp1Q811S7 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 41.7 ms