Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Snx21-206ENSMUST00000174070 1446 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Gm42939-201ENSMUST00000197514 2205 ntBASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Cct4-201ENSMUST00000020562 1634 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Tpst2-202ENSMUST00000071455 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Tmem39b-201ENSMUST00000102588 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Scrib-203ENSMUST00000109946 5545 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Klhl25-201ENSMUST00000092073 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Rragd-203ENSMUST00000098190 5008 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Tsen34-202ENSMUST00000108627 1319 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Diaph1-205ENSMUST00000115634 5666 ntAPPRIS P3 TSL 5 BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Rem1-201ENSMUST00000000369 1663 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Nudt10-201ENSMUST00000103006 1775 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Gm45141-201ENSMUST00000206502 1888 ntBASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 Gas2l1-203ENSMUST00000109895 2530 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
Trim40Q3UWA4 A730056A06Rik-201ENSMUST00000181299 2689 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Ssc4d-203ENSMUST00000111152 2745 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Cebpg-202ENSMUST00000130491 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 A930012O16Rik-202ENSMUST00000156418 1541 ntTSL 2 BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Nnat-207ENSMUST00000173041 760 ntTSL 5 BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Ltb-203ENSMUST00000173600 905 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Gm37352-201ENSMUST00000193908 2181 ntBASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Gm18755-201ENSMUST00000218030 1099 ntBASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Acvr1b-201ENSMUST00000000544 4413 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Galnt1-206ENSMUST00000170243 4108 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim40Q3UWA4 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Cd82-201ENSMUST00000028644 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Ythdc1-202ENSMUST00000119339 3222 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Tial1-201ENSMUST00000033135 1580 ntAPPRIS ALT1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 A930002H24Rik-201ENSMUST00000050753 492 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Oaz1-201ENSMUST00000060987 1071 ntAPPRIS ALT1 TSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 S1pr4-201ENSMUST00000053646 2386 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Myo1b-203ENSMUST00000114537 4618 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Mapre3-202ENSMUST00000200692 1816 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Rfx7-201ENSMUST00000093820 7988 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trim40Q3UWA4 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim40Q3UWA4 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC17.83■□□□□ 0.45
Trim40Q3UWA4 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.83■□□□□ 0.45
Trim40Q3UWA4 Ctbp2-201ENSMUST00000033269 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim40Q3UWA4 Gnptg-202ENSMUST00000115154 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim40Q3UWA4 Vamp4-204ENSMUST00000135241 1461 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim40Q3UWA4 Tial1-209ENSMUST00000141126 1344 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Pdgfa-204ENSMUST00000110897 1287 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Nsmf-213ENSMUST00000140737 862 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Snrpa1-206ENSMUST00000153609 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Ppp1r35-201ENSMUST00000031739 956 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Foxj1-201ENSMUST00000036215 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Itgb5-202ENSMUST00000115028 3090 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim40Q3UWA4 Mrm1-201ENSMUST00000018549 2477 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Maff-201ENSMUST00000096350 1933 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Spata2l-201ENSMUST00000098327 2380 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Ttc34-203ENSMUST00000207854 4733 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Ccdc149-201ENSMUST00000059428 3295 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Nfkbib-202ENSMUST00000085851 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Dpy19l1-203ENSMUST00000142064 3489 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC17.82■□□□□ 0.44
Trim40Q3UWA4 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Prmt9-201ENSMUST00000056237 2781 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Ppp2ca-201ENSMUST00000020608 7102 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Nfatc2-201ENSMUST00000029057 2310 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Hopx-203ENSMUST00000120827 1217 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Adpgk-205ENSMUST00000217570 2484 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Ankrd9-204ENSMUST00000140788 1451 ntAPPRIS P2 TSL 3 BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Dus3l-201ENSMUST00000007747 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim40Q3UWA4 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Spc24-201ENSMUST00000098942 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Klhl36-201ENSMUST00000034287 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Wrap73-201ENSMUST00000030895 1598 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Arx-201ENSMUST00000046565 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Gm13001-201ENSMUST00000154285 774 ntTSL 2 BASIC17.8■□□□□ 0.44
Trim40Q3UWA4 Tmem127-202ENSMUST00000174288 842 ntTSL 2 BASIC17.8■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 21.9 ms