Protein–RNA interactions for Protein: Q3ULL6

Upf3b, UPF3 regulator of nonsense transcripts homolog B (yeast), mousemouse

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Upf3bQ3ULL6 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Gm7860-201ENSMUST00000121190 879 ntBASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 AC099934.2-201ENSMUST00000196389 70 ntBASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 AC156953.1-201ENSMUST00000196953 70 ntBASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 AC157822.2-201ENSMUST00000200291 70 ntBASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Scarb1-201ENSMUST00000086075 2521 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC20.36■□□□□ 0.85
Upf3bQ3ULL6 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Cbx6-203ENSMUST00000109627 5806 ntAPPRIS P2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Gm18284-201ENSMUST00000172604 624 ntBASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Rasl10b-201ENSMUST00000021022 996 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Gm5874-201ENSMUST00000096101 508 ntBASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
Upf3bQ3ULL6 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Qrich1-206ENSMUST00000193258 2291 ntTSL 2 BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Med16-204ENSMUST00000165684 2950 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 1700012B09Rik-204ENSMUST00000191047 654 ntAPPRIS ALT2 TSL 3 BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Wdr41-202ENSMUST00000159647 2289 ntTSL 5 BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Wdr41-206ENSMUST00000167155 2289 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
Upf3bQ3ULL6 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Bend7-204ENSMUST00000184139 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Smox-202ENSMUST00000110179 1320 ntTSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Kctd17-206ENSMUST00000162517 901 ntAPPRIS P4 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Kctd17-209ENSMUST00000166142 826 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Hist1h2ag-201ENSMUST00000091741 485 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.33■□□□□ 0.85
Upf3bQ3ULL6 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Dusp14-202ENSMUST00000100705 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Reep4-203ENSMUST00000226563 1444 ntBASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Gdf15-202ENSMUST00000110103 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Jmjd7-201ENSMUST00000044675 1373 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
Upf3bQ3ULL6 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Gm37352-201ENSMUST00000193908 2181 ntBASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Hsd17b2-201ENSMUST00000034304 1320 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 P4hb-203ENSMUST00000168360 770 ntTSL 3 BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Gm38205-201ENSMUST00000192243 258 ntBASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Gm42778-201ENSMUST00000199644 553 ntBASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Cnr1-201ENSMUST00000057188 5807 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Phox2b-201ENSMUST00000012664 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
Upf3bQ3ULL6 Gm29394-202ENSMUST00000176935 1326 ntAPPRIS P5 TSL 2 BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Grifin-201ENSMUST00000042993 613 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Fgfrl1-201ENSMUST00000013633 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Erc1-202ENSMUST00000079582 2304 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Zfp668-202ENSMUST00000106261 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
Upf3bQ3ULL6 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 Sirpa-209ENSMUST00000160276 876 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 E130116L18Rik-201ENSMUST00000066954 306 ntAPPRIS P1 BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
Upf3bQ3ULL6 Tk2-201ENSMUST00000050211 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3bQ3ULL6 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3bQ3ULL6 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3bQ3ULL6 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3bQ3ULL6 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3bQ3ULL6 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
Upf3bQ3ULL6 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Dnaja4-201ENSMUST00000070070 3003 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Dact3-201ENSMUST00000108493 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
Upf3bQ3ULL6 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
Retrieved 100 of 76,532 protein–RNA pairs in 60.8 ms