Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC24.45■■□□□ 1.51
Ddb1Q3U1J4 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 Gm13158-201ENSMUST00000122007 736 ntBASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 2310033P09Rik-201ENSMUST00000020719 1285 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 Mob2-201ENSMUST00000084418 1490 ntAPPRIS P2 TSL 1 (best) BASIC24.45■■□□□ 1.5
Ddb1Q3U1J4 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 9430060I03Rik-201ENSMUST00000191563 1689 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Fezf2-203ENSMUST00000224714 2429 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Gm10167-201ENSMUST00000150411 1479 ntBASIC24.44■■□□□ 1.5
Ddb1Q3U1J4 Bcl10-201ENSMUST00000029842 1949 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddb1Q3U1J4 Slbp-201ENSMUST00000057551 1906 ntAPPRIS P3 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddb1Q3U1J4 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC24.43■■□□□ 1.5
Ddb1Q3U1J4 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
Ddb1Q3U1J4 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 Phf12-202ENSMUST00000108360 3047 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 Gm15847-201ENSMUST00000121417 1065 ntBASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 D930007J09Rik-201ENSMUST00000057911 393 ntAPPRIS P1 BASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
Ddb1Q3U1J4 Mindy2-202ENSMUST00000213380 2521 ntAPPRIS ALT2 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Gm37035-201ENSMUST00000194809 2148 ntBASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Nipsnap2-201ENSMUST00000086046 2112 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Rrp15-201ENSMUST00000001339 1321 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Ccl27a-219ENSMUST00000173865 657 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Gpr137-202ENSMUST00000099774 1434 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
Ddb1Q3U1J4 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
Ddb1Q3U1J4 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddb1Q3U1J4 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddb1Q3U1J4 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddb1Q3U1J4 Tax1bp3-201ENSMUST00000040687 1523 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
Ddb1Q3U1J4 Slc35b3-209ENSMUST00000225432 2216 ntAPPRIS P3 BASIC24.39■■□□□ 1.5
Ddb1Q3U1J4 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
Ddb1Q3U1J4 Scamp3-201ENSMUST00000029684 1489 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ddb1Q3U1J4 Bfsp1-202ENSMUST00000099296 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ddb1Q3U1J4 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.5
Ddb1Q3U1J4 Tlx1os-201ENSMUST00000173437 620 ntTSL 3 BASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Mir5122-201ENSMUST00000175004 89 ntBASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Aga-203ENSMUST00000211424 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 AC163280.1-201ENSMUST00000228194 1100 ntBASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Snx12-201ENSMUST00000077876 1002 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Rps28-201ENSMUST00000087342 392 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Dusp12-201ENSMUST00000027970 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
Ddb1Q3U1J4 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 B430219N15Rik-201ENSMUST00000147230 835 ntTSL 2 BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Gm10231-201ENSMUST00000181584 441 ntBASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Gm10175-202ENSMUST00000208752 441 ntBASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Elof1-204ENSMUST00000214394 567 ntAPPRIS P1 TSL 2 BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Brwd1-203ENSMUST00000113827 2382 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Aqp5-201ENSMUST00000088200 1376 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC24.38■■□□□ 1.49
Ddb1Q3U1J4 Irak1-207ENSMUST00000114360 2441 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Gmcl1-202ENSMUST00000113679 960 ntTSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Gm6433-201ENSMUST00000118634 875 ntBASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Gm35240-201ENSMUST00000218335 661 ntTSL 2 BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
Ddb1Q3U1J4 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Spats2-201ENSMUST00000063517 3065 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Foxo6-201ENSMUST00000102656 2615 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Scrn2-201ENSMUST00000021249 1530 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Gm43672-201ENSMUST00000199072 1731 ntBASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Sel1l3-201ENSMUST00000031090 4512 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC24.36■■□□□ 1.49
Ddb1Q3U1J4 Msx1-201ENSMUST00000063116 1935 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Gm32051-202ENSMUST00000197905 2385 ntBASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Nab1-201ENSMUST00000069792 3874 ntAPPRIS P2 TSL 1 (best) BASIC24.35■■□□□ 1.49
Ddb1Q3U1J4 Macrod2-206ENSMUST00000110064 4883 ntAPPRIS P2 TSL 1 (best) BASIC24.34■■□□□ 1.49
Retrieved 100 of 76,532 protein–RNA pairs in 17.2 ms