Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Cdh11P55288 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.35
Cdh11P55288 Slc17a7-202ENSMUST00000209634 1860 ntTSL 5 BASIC17.27■□□□□ 0.35
Cdh11P55288 Scaf11-201ENSMUST00000047835 5766 ntTSL 5 BASIC17.26■□□□□ 0.35
Cdh11P55288 D830036C21Rik-202ENSMUST00000208263 1548 ntBASIC17.26■□□□□ 0.35
Cdh11P55288 Tusc3-203ENSMUST00000209440 1535 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Rhno1-203ENSMUST00000112152 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Sox12-201ENSMUST00000063332 4169 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
Cdh11P55288 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Camk1-201ENSMUST00000032409 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Sirt1-202ENSMUST00000105442 3740 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Hotairm1-201ENSMUST00000129546 409 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Cdh11P55288 Gm7160-202ENSMUST00000188519 1027 ntBASIC17.26■□□□□ 0.35
Cdh11P55288 Gm21168-201ENSMUST00000199646 1096 ntBASIC17.26■□□□□ 0.35
Cdh11P55288 Trnau1ap-201ENSMUST00000030730 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Pop7-201ENSMUST00000031728 881 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 D830025C05Rik-201ENSMUST00000059474 976 ntBASIC17.26■□□□□ 0.35
Cdh11P55288 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
Cdh11P55288 Map4k5-203ENSMUST00000110570 4498 ntAPPRIS P5 TSL 5 BASIC17.26■□□□□ 0.35
Cdh11P55288 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC17.26■□□□□ 0.35
Cdh11P55288 Nabp2-202ENSMUST00000164199 1371 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.26■□□□□ 0.35
Cdh11P55288 Zfp467-202ENSMUST00000114556 2287 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Cdh11P55288 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cdh11P55288 Ascl4-202ENSMUST00000170396 2016 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Cdh11P55288 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Ankle1-201ENSMUST00000119976 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Mir6236-201ENSMUST00000184437 123 ntBASIC17.25■□□□□ 0.35
Cdh11P55288 Slc39a10-201ENSMUST00000027131 5498 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Cdh11P55288 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Cdh11P55288 Mplkip-201ENSMUST00000049744 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdh11P55288 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC17.24■□□□□ 0.35
Cdh11P55288 Gm4779-203ENSMUST00000147742 1991 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cdh11P55288 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdh11P55288 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC17.24■□□□□ 0.35
Cdh11P55288 Clcc1-203ENSMUST00000106613 3064 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdh11P55288 Aktip-201ENSMUST00000109609 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdh11P55288 Gm12251-201ENSMUST00000117893 792 ntBASIC17.24■□□□□ 0.35
Cdh11P55288 Ly6h-206ENSMUST00000156032 752 ntAPPRIS P3 TSL 3 BASIC17.24■□□□□ 0.35
Cdh11P55288 Apoe-205ENSMUST00000173739 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdh11P55288 Apoe-209ENSMUST00000174355 1104 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cdh11P55288 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC17.24■□□□□ 0.35
Cdh11P55288 Ly6h-201ENSMUST00000023241 906 ntAPPRIS ALT1 TSL 2 BASIC17.24■□□□□ 0.35
Cdh11P55288 Apoe-201ENSMUST00000003066 1128 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Cdh11P55288 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.24■□□□□ 0.35
Cdh11P55288 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
Cdh11P55288 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Cdh11P55288 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdh11P55288 Khk-204ENSMUST00000201621 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Ppp1cb-201ENSMUST00000015100 5962 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Gm7628-201ENSMUST00000134690 2010 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Glra1-203ENSMUST00000108853 1797 ntTSL 5 BASIC17.23■□□□□ 0.35
Cdh11P55288 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Cdh11P55288 Slk-201ENSMUST00000026043 7278 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cdh11P55288 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC17.23■□□□□ 0.35
Cdh11P55288 Gon7-201ENSMUST00000173969 1152 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
Cdh11P55288 Kctd17-201ENSMUST00000089414 1180 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cdh11P55288 Fbxl5-201ENSMUST00000047857 2858 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Ssx2ip-201ENSMUST00000039021 3410 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Asap2-202ENSMUST00000064595 5678 ntAPPRIS P4 TSL 5 BASIC17.23■□□□□ 0.35
Cdh11P55288 Ankrd9-203ENSMUST00000135131 1563 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Cdh11P55288 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
Cdh11P55288 Arhgap21-201ENSMUST00000114594 7351 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Cdh11P55288 Chd3os-201ENSMUST00000129321 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Itsn2-215ENSMUST00000220311 6080 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC17.22■□□□□ 0.35
Cdh11P55288 Gm15867-201ENSMUST00000159407 388 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Gm43173-201ENSMUST00000202246 593 ntBASIC17.22■□□□□ 0.35
Cdh11P55288 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 A130051J06Rik-201ENSMUST00000180649 2618 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Btbd2-201ENSMUST00000003434 3026 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
Cdh11P55288 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
Cdh11P55288 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
Cdh11P55288 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Cdh11P55288 Xrcc6-202ENSMUST00000100399 3296 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 18.5 ms