Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Rras-201ENSMUST00000044111 995 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Mcu-202ENSMUST00000020312 2872 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
RaraP11416 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Bmpr1b-203ENSMUST00000106230 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Nck2-201ENSMUST00000086421 2772 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Galnt3-201ENSMUST00000028378 3885 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Upf1-201ENSMUST00000075666 4618 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Rab3ip-201ENSMUST00000020375 2690 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
RaraP11416 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 Irak1bp1-202ENSMUST00000113245 2158 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RaraP11416 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 AC165080.2-201ENSMUST00000217491 1530 ntBASIC20.59■□□□□ 0.89
RaraP11416 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC20.59■□□□□ 0.89
RaraP11416 2810001G20Rik-202ENSMUST00000146333 959 ntTSL 3 BASIC20.59■□□□□ 0.89
RaraP11416 Fam53a-202ENSMUST00000065119 2009 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 Nrxn2-201ENSMUST00000077182 6059 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
RaraP11416 Zmynd10-201ENSMUST00000010188 1765 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 Map6-202ENSMUST00000107100 2335 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
RaraP11416 C2cd4a-201ENSMUST00000054500 1395 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
RaraP11416 Cyb5r4-201ENSMUST00000168529 2644 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
RaraP11416 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RaraP11416 Rps2-ps10-202ENSMUST00000170335 965 ntBASIC20.58■□□□□ 0.89
RaraP11416 1700064M15Rik-201ENSMUST00000185726 645 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
RaraP11416 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
RaraP11416 Kcng3-201ENSMUST00000051482 3356 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
RaraP11416 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC20.57■□□□□ 0.88
RaraP11416 Gm29442-201ENSMUST00000188725 724 ntTSL 3 BASIC20.57■□□□□ 0.88
RaraP11416 Fam168b-208ENSMUST00000191307 844 ntTSL 2 BASIC20.57■□□□□ 0.88
RaraP11416 Igfbpl1-201ENSMUST00000044297 2864 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RaraP11416 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
RaraP11416 Olig2-201ENSMUST00000035608 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
RaraP11416 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
RaraP11416 Gm5540-201ENSMUST00000131852 1848 ntBASIC20.57■□□□□ 0.88
RaraP11416 Klhl2-201ENSMUST00000034017 3412 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
RaraP11416 Kctd15-201ENSMUST00000032709 2480 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 D030056L22Rik-201ENSMUST00000055792 1631 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Lpcat2-205ENSMUST00000210099 2179 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Spsb4-201ENSMUST00000055433 2720 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Tpbgl-201ENSMUST00000178124 3022 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
RaraP11416 Taf3-203ENSMUST00000114907 695 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 4933406I18Rik-202ENSMUST00000163996 904 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Gsc-201ENSMUST00000021513 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
RaraP11416 Fam105a-203ENSMUST00000226170 3043 ntBASIC20.56■□□□□ 0.88
RaraP11416 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
RaraP11416 Magi2-202ENSMUST00000101558 6530 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Pla2g12a-201ENSMUST00000029629 1561 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Foxf1-201ENSMUST00000181504 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Prmt3-201ENSMUST00000032715 2507 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Tmem196-202ENSMUST00000183694 845 ntTSL 3 BASIC20.55■□□□□ 0.88
RaraP11416 Rps7-203ENSMUST00000221871 820 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Phf23-204ENSMUST00000133485 1607 ntTSL 5 BASIC20.55■□□□□ 0.88
RaraP11416 Map3k21-201ENSMUST00000034316 5693 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
RaraP11416 Espn-210ENSMUST00000105656 1593 ntTSL 5 BASIC20.55■□□□□ 0.88
RaraP11416 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.54■□□□□ 0.88
RaraP11416 Fbxo30-201ENSMUST00000070300 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Mark2-203ENSMUST00000051711 2867 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Rbm43-201ENSMUST00000102767 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Fcmr-201ENSMUST00000038829 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Pfdn4-204ENSMUST00000109148 736 ntTSL 3 BASIC20.54■□□□□ 0.88
RaraP11416 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC20.54■□□□□ 0.88
RaraP11416 Krtap5-5-201ENSMUST00000097942 1177 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
RaraP11416 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
RaraP11416 Parl-201ENSMUST00000048642 1348 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Dnajb2-206ENSMUST00000187058 1732 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Srsf1-202ENSMUST00000107920 1209 ntTSL 5 BASIC20.53■□□□□ 0.88
RaraP11416 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Rps2-208ENSMUST00000170715 998 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Rps2-201ENSMUST00000054289 1094 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Proca1-201ENSMUST00000060539 960 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
RaraP11416 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Fbxo17-201ENSMUST00000032818 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Gp5-201ENSMUST00000061190 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Fam129b-201ENSMUST00000028135 3714 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 3010003L21Rik-201ENSMUST00000047953 1729 ntTSL 5 BASIC20.53■□□□□ 0.88
RaraP11416 Pno1-201ENSMUST00000020317 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
RaraP11416 Pqlc1-207ENSMUST00000140594 2356 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Nr1h3-204ENSMUST00000111356 1955 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Impdh2-201ENSMUST00000081111 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Tmem62-201ENSMUST00000067582 2921 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Larp6-201ENSMUST00000038407 2440 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Kazald1-201ENSMUST00000026234 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Tarbp2-202ENSMUST00000100168 1278 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Bhlhe22-201ENSMUST00000026120 3344 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
RaraP11416 Azi2-207ENSMUST00000134433 2499 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Tuba1b-201ENSMUST00000077577 1743 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
RaraP11416 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.88
RaraP11416 Cdkl3-206ENSMUST00000109079 2051 ntAPPRIS ALT2 TSL 5 BASIC20.52■□□□□ 0.87
Retrieved 100 of 76,532 protein–RNA pairs in 43.9 ms