Protein–RNA interactions for Protein: O88207

Col5a1, Collagen alpha-1(V) chain, mousemouse

Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col5a1O88207 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Rchy1-204ENSMUST00000169948 1417 ntTSL 3 BASIC17.41■□□□□ 0.38
Col5a1O88207 Gbx2-201ENSMUST00000036954 2135 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Lsm14a-201ENSMUST00000085585 2944 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Sae1-201ENSMUST00000094815 1875 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
Col5a1O88207 Rprm-201ENSMUST00000100089 1460 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col5a1O88207 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col5a1O88207 D330020A13Rik-201ENSMUST00000181956 1069 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
Col5a1O88207 Gm9484-201ENSMUST00000195892 1159 ntBASIC17.4■□□□□ 0.38
Col5a1O88207 Rab3c-203ENSMUST00000224180 967 ntBASIC17.4■□□□□ 0.38
Col5a1O88207 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Pdcd7-201ENSMUST00000048184 2419 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Triobp-202ENSMUST00000109688 2553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Arid3c-204ENSMUST00000171251 1751 ntAPPRIS P3 TSL 5 BASIC17.4■□□□□ 0.38
Col5a1O88207 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
Col5a1O88207 Gm5643-201ENSMUST00000117081 966 ntBASIC17.4■□□□□ 0.38
Col5a1O88207 Schip1-205ENSMUST00000182532 2059 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
Col5a1O88207 Riox1-201ENSMUST00000053744 2344 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
Col5a1O88207 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
Col5a1O88207 Set-201ENSMUST00000067996 2834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col5a1O88207 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col5a1O88207 Unc50-201ENSMUST00000027285 1414 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col5a1O88207 Rell2-210ENSMUST00000176104 2150 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
Col5a1O88207 Ppm1n-201ENSMUST00000032560 1648 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col5a1O88207 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
Col5a1O88207 Gm15441-202ENSMUST00000107095 1653 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col5a1O88207 3110062M04Rik-202ENSMUST00000115006 1501 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col5a1O88207 Ier2-201ENSMUST00000060427 1522 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
Col5a1O88207 Mgll-203ENSMUST00000113582 1034 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col5a1O88207 Wdr20-205ENSMUST00000193053 1351 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
Col5a1O88207 Gm5475-201ENSMUST00000132119 2608 ntAPPRIS P5 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col5a1O88207 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
Col5a1O88207 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC17.38■□□□□ 0.37
Col5a1O88207 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.37■□□□□ 0.37
Col5a1O88207 Psenen-201ENSMUST00000043898 708 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Hist2h2aa2-201ENSMUST00000074976 528 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Col5a1O88207 Hist2h2aa1-201ENSMUST00000078756 586 ntAPPRIS P1 BASIC17.37■□□□□ 0.37
Col5a1O88207 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Nkd1-203ENSMUST00000211113 1474 ntTSL 5 BASIC17.37■□□□□ 0.37
Col5a1O88207 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Serpinh1-202ENSMUST00000169437 2274 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Insig2-203ENSMUST00000159085 1252 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC17.37■□□□□ 0.37
Col5a1O88207 Tbc1d7-201ENSMUST00000021797 1239 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC17.37■□□□□ 0.37
Col5a1O88207 Rasgrp2-206ENSMUST00000113472 2124 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Ptpre-202ENSMUST00000209256 2593 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Col5a1O88207 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC17.37■□□□□ 0.37
Col5a1O88207 Dbndd1-202ENSMUST00000176286 1344 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Gm7075-201ENSMUST00000054760 425 ntAPPRIS P1 BASIC17.36■□□□□ 0.37
Col5a1O88207 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC17.36■□□□□ 0.37
Col5a1O88207 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
Col5a1O88207 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
Col5a1O88207 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
Col5a1O88207 Jsrp1-201ENSMUST00000020435 955 ntAPPRIS ALT2 TSL 2 BASIC17.35■□□□□ 0.37
Col5a1O88207 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Gm34220-201ENSMUST00000223001 2709 ntBASIC17.35■□□□□ 0.37
Col5a1O88207 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC17.35■□□□□ 0.37
Col5a1O88207 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Uba2-201ENSMUST00000102746 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Cacng6-201ENSMUST00000108647 868 ntTSL 5 BASIC17.35■□□□□ 0.37
Col5a1O88207 A730015C16Rik-201ENSMUST00000164855 1221 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
Col5a1O88207 Gm44899-201ENSMUST00000207451 391 ntTSL 3 BASIC17.35■□□□□ 0.37
Col5a1O88207 AC121577.1-201ENSMUST00000227302 707 ntBASIC17.35■□□□□ 0.37
Col5a1O88207 Runx1-203ENSMUST00000168195 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
Col5a1O88207 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC17.34■□□□□ 0.37
Col5a1O88207 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Dedd-204ENSMUST00000111300 2563 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Gm5901-201ENSMUST00000106805 1140 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
Col5a1O88207 1810059H22Rik-205ENSMUST00000204570 690 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 AC153881.2-201ENSMUST00000214877 204 ntBASIC17.34■□□□□ 0.37
Col5a1O88207 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Slc35f5-201ENSMUST00000027580 2733 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC17.34■□□□□ 0.37
Col5a1O88207 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
Col5a1O88207 Gm12979-201ENSMUST00000145488 405 ntTSL 2 BASIC17.33■□□□□ 0.37
Col5a1O88207 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC17.33■□□□□ 0.37
Col5a1O88207 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Col5a1O88207 Mal2-201ENSMUST00000025356 2950 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
Retrieved 100 of 76,532 protein–RNA pairs in 28.5 ms