Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Paqr6-204ENSMUST00000147991 1670 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 Cbfb-202ENSMUST00000109392 2891 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 H2afx-201ENSMUST00000052686 1384 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Chd3B1AR17 3110082J24Rik-201ENSMUST00000127749 327 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Chd3B1AR17 Immp2l-203ENSMUST00000134965 977 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
Chd3B1AR17 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
Chd3B1AR17 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.72■□□□□ 0.59
Chd3B1AR17 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
Chd3B1AR17 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC18.72■□□□□ 0.59
Chd3B1AR17 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Pcnx-204ENSMUST00000221721 8318 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
Chd3B1AR17 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Slc35d2-201ENSMUST00000099441 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Caml-201ENSMUST00000021963 1382 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.71■□□□□ 0.59
Chd3B1AR17 Gm27032-201ENSMUST00000183124 1116 ntBASIC18.71■□□□□ 0.59
Chd3B1AR17 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
Chd3B1AR17 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 Map1lc3b-203ENSMUST00000181521 775 ntTSL 3 BASIC18.7■□□□□ 0.58
Chd3B1AR17 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 Etv4-202ENSMUST00000107176 2377 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 Ppp3ca-201ENSMUST00000056758 2194 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
Chd3B1AR17 Gm37563-201ENSMUST00000192580 1513 ntBASIC18.7■□□□□ 0.58
Chd3B1AR17 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 Rps2-ps11-201ENSMUST00000195283 868 ntBASIC18.7■□□□□ 0.58
Chd3B1AR17 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Chd3B1AR17 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Chd3B1AR17 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
Chd3B1AR17 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Tomm6-201ENSMUST00000113301 594 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Gm53-201ENSMUST00000129907 1172 ntTSL 2 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Chd3B1AR17 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Etv4-201ENSMUST00000017868 2395 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC18.69■□□□□ 0.58
Chd3B1AR17 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
Chd3B1AR17 Tcf7-202ENSMUST00000109071 1742 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Snapc2-201ENSMUST00000011981 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Pex16-201ENSMUST00000028650 1392 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Macrod2-202ENSMUST00000078027 1669 ntAPPRIS P2 TSL 5 BASIC18.68■□□□□ 0.58
Chd3B1AR17 Nudt8-203ENSMUST00000122924 1082 ntTSL 2 BASIC18.68■□□□□ 0.58
Chd3B1AR17 Gm13441-201ENSMUST00000140104 1168 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 AC112142.1-201ENSMUST00000228796 918 ntBASIC18.68■□□□□ 0.58
Chd3B1AR17 Ubxn1-201ENSMUST00000096255 1041 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Hmx2-202ENSMUST00000183219 1546 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Dao-201ENSMUST00000086599 1525 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Sptssa-201ENSMUST00000056228 1346 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Dmrt1-201ENSMUST00000025755 2340 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Ssbp2-202ENSMUST00000042122 1633 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Crim1-201ENSMUST00000112498 5995 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
Chd3B1AR17 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC18.68■□□□□ 0.58
Chd3B1AR17 AC131586.2-201ENSMUST00000228370 1512 ntBASIC18.67■□□□□ 0.58
Chd3B1AR17 Lgmn-202ENSMUST00000110020 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Fdx1l-201ENSMUST00000010348 812 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Gm40460-201ENSMUST00000211591 735 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Chd3B1AR17 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Chd3B1AR17 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Chd3B1AR17 Dxo-211ENSMUST00000180043 1447 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
Chd3B1AR17 Aifm2-201ENSMUST00000067857 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Hrk-201ENSMUST00000054836 5382 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Gm12473-201ENSMUST00000137535 579 ntTSL 5 BASIC18.67■□□□□ 0.58
Chd3B1AR17 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC18.67■□□□□ 0.58
Chd3B1AR17 Zcchc13-201ENSMUST00000033692 1085 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
Chd3B1AR17 Nbl1-201ENSMUST00000042844 1793 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Fbxo44-201ENSMUST00000057907 1829 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
Chd3B1AR17 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Chd3B1AR17 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chd3B1AR17 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Chd3B1AR17 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC18.66■□□□□ 0.58
Chd3B1AR17 Gm10065-201ENSMUST00000076238 345 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
Chd3B1AR17 Ppt2-204ENSMUST00000168391 1342 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Chd3B1AR17 1810055G02Rik-201ENSMUST00000039048 1882 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
Chd3B1AR17 Osbp-201ENSMUST00000025590 4578 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
Chd3B1AR17 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
Chd3B1AR17 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.66■□□□□ 0.58
Retrieved 100 of 76,532 protein–RNA pairs in 18.8 ms