Protein–RNA interactions for Protein: Q9Z0Y9

Nr1h3, Oxysterols receptor LXR-alpha, mousemouse

Predictions only

Length 445 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1h3Q9Z0Y9 Gm11762-201ENSMUST00000135630 1705 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1h3Q9Z0Y9 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1h3Q9Z0Y9 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC20.77■□□□□ 0.92
Nr1h3Q9Z0Y9 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
Nr1h3Q9Z0Y9 Ghitm-201ENSMUST00000042564 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.91
Nr1h3Q9Z0Y9 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.77■□□□□ 0.91
Nr1h3Q9Z0Y9 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Zfp637-201ENSMUST00000112858 650 ntTSL 2 BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Zfp637-203ENSMUST00000112860 1231 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Ptbp3-204ENSMUST00000140925 606 ntTSL 3 BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.76■□□□□ 0.91
Nr1h3Q9Z0Y9 Ung-202ENSMUST00000102584 2136 ntAPPRIS P3 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 P2ry2-202ENSMUST00000178340 2137 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Tedc1-201ENSMUST00000049271 2441 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Tfdp2-202ENSMUST00000165120 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Lgals7-201ENSMUST00000081457 754 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.75■□□□□ 0.91
Nr1h3Q9Z0Y9 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Adssl1-202ENSMUST00000180015 1819 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Mfap2-201ENSMUST00000071977 1073 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Aif1l-201ENSMUST00000001920 3117 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Ndel1-201ENSMUST00000018880 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Rasef-203ENSMUST00000222414 2127 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Slc30a4-201ENSMUST00000005952 5458 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
Nr1h3Q9Z0Y9 Rab7-202ENSMUST00000113596 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Dgat1-201ENSMUST00000023214 1888 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Kmt5b-216ENSMUST00000176926 1551 ntAPPRIS ALT2 TSL 5 BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Gm43909-201ENSMUST00000203443 1876 ntBASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Mael-201ENSMUST00000038782 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Fgfr2-217ENSMUST00000124096 2425 ntTSL 5 BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
Nr1h3Q9Z0Y9 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Syt5-201ENSMUST00000065957 1750 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Fam3c-203ENSMUST00000163963 1617 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Gm6420-201ENSMUST00000193885 723 ntBASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 1700028I16Rik-201ENSMUST00000076984 1048 ntTSL 5 BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Gng5-201ENSMUST00000090031 593 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Klrg2-201ENSMUST00000096030 2276 ntAPPRIS P2 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Picalm-215ENSMUST00000209068 3511 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
Nr1h3Q9Z0Y9 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Nespas-201ENSMUST00000143738 1083 ntBASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Foxi3-202ENSMUST00000163089 1278 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Foxi3-201ENSMUST00000069634 1206 ntAPPRIS P2 TSL 5 BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Ssbp3-201ENSMUST00000030367 3195 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
Nr1h3Q9Z0Y9 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Gm13534-201ENSMUST00000121169 513 ntBASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Tpsg1-204ENSMUST00000160920 867 ntTSL 3 BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Gm5408-201ENSMUST00000197998 747 ntBASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Gm10655-201ENSMUST00000098658 1397 ntBASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
Nr1h3Q9Z0Y9 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.69■□□□□ 0.9
Nr1h3Q9Z0Y9 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Nr1h3Q9Z0Y9 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nr1h3Q9Z0Y9 Etv2-201ENSMUST00000108147 1048 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Nr1h3Q9Z0Y9 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC20.69■□□□□ 0.9
Nr1h3Q9Z0Y9 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Retrieved 100 of 76,532 protein–RNA pairs in 24.7 ms