Protein–RNA interactions for Protein: Q9D0R4

Ddx56, Probable ATP-dependent RNA helicase DDX56, mousemouse

Known RBP Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx56Q9D0R4 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Lmtk3-204ENSMUST00000209617 5051 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 Nfkbid-203ENSMUST00000108176 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
Ddx56Q9D0R4 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Gmpr-201ENSMUST00000000260 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Ost4-202ENSMUST00000132253 1144 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Chrac1-202ENSMUST00000134353 538 ntAPPRIS ALT2 TSL 2 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 AV026068-208ENSMUST00000189098 286 ntTSL 5 BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Gm43060-201ENSMUST00000200621 289 ntBASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Sdf2l1-201ENSMUST00000023453 1108 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.81
Ddx56Q9D0R4 Tmem132b-201ENSMUST00000031446 7995 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Vapa-201ENSMUST00000024897 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Lypd3-201ENSMUST00000080718 1649 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Sbspon-201ENSMUST00000040695 2748 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
Ddx56Q9D0R4 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Vps26a-201ENSMUST00000092473 2712 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Hist1h2bp-201ENSMUST00000102982 469 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 CT030146.1-201ENSMUST00000220919 217 ntBASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Disc1-204ENSMUST00000115885 2408 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Disc1-202ENSMUST00000075730 2408 ntAPPRIS P3 TSL 5 BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Runx2-210ENSMUST00000162373 1565 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Ddx56Q9D0R4 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Krt87-201ENSMUST00000081945 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Atf1-201ENSMUST00000023769 2365 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Pigx-210ENSMUST00000155966 963 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Gm21168-201ENSMUST00000199646 1096 ntBASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
Ddx56Q9D0R4 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Ddx56Q9D0R4 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Sept4-206ENSMUST00000122067 1303 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Xkr6-201ENSMUST00000119973 2963 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Hes3-202ENSMUST00000218045 962 ntAPPRIS ALT2 TSL 5 BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 1700012B09Rik-201ENSMUST00000060330 688 ntAPPRIS P2 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Pde7a-202ENSMUST00000099195 6298 ntAPPRIS ALT1 TSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 Auh-203ENSMUST00000119311 2627 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
Ddx56Q9D0R4 0610038B21Rik-202ENSMUST00000184762 1524 ntBASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Ccdc85c-202ENSMUST00000222310 4298 ntAPPRIS P2 TSL 5 BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Dusp15-202ENSMUST00000109811 753 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Gm13790-201ENSMUST00000156209 473 ntTSL 3 BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Gm18688-201ENSMUST00000204695 1859 ntBASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
Ddx56Q9D0R4 Cox18-202ENSMUST00000118816 1307 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Bmp2k-202ENSMUST00000112974 3244 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 M5C1000I18Rik-202ENSMUST00000186205 1414 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Tmem11-203ENSMUST00000168218 1511 ntTSL 2 BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Pqlc3-201ENSMUST00000054536 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Gm15270-201ENSMUST00000125158 870 ntTSL 3 BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Gm11650-201ENSMUST00000141271 1145 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Wdr4-203ENSMUST00000167419 813 ntTSL 3 BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Nabp2-201ENSMUST00000026439 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 R3hdm4-201ENSMUST00000045628 1898 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
Ddx56Q9D0R4 Lrp8-204ENSMUST00000106733 3332 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
Retrieved 100 of 76,532 protein–RNA pairs in 39.4 ms