Protein–RNA interactions for Protein: Q91Y21

Pcdha1, Protocadherin alpha 1, mousemouse

Predictions only

Length 948 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdha1Q91Y21 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha1Q91Y21 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC19.97■□□□□ 0.79
Pcdha1Q91Y21 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Pcdha1Q91Y21 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Tcp11-203ENSMUST00000114836 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Daxx-202ENSMUST00000170075 2673 ntAPPRIS P2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Gm13146-201ENSMUST00000118508 780 ntBASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Gm12933-201ENSMUST00000120203 872 ntBASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Gm20100-201ENSMUST00000209418 2272 ntBASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC19.96■□□□□ 0.79
Pcdha1Q91Y21 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Zfp710-204ENSMUST00000206039 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Tcf7l1-201ENSMUST00000069536 3042 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Gm30085-201ENSMUST00000209694 594 ntTSL 3 BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Neto2-205ENSMUST00000216286 2932 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Slc3a2-201ENSMUST00000010239 1819 ntAPPRIS P3 TSL 1 (best) BASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Gm43545-201ENSMUST00000196765 2779 ntBASIC19.95■□□□□ 0.78
Pcdha1Q91Y21 Ngb-203ENSMUST00000110177 1611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Fbxo27-203ENSMUST00000108281 1948 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Fbxo6-202ENSMUST00000056965 1163 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Stac-201ENSMUST00000035083 2644 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Ltbr-201ENSMUST00000032489 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Clip1-205ENSMUST00000111566 6133 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
Pcdha1Q91Y21 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Mgat2-201ENSMUST00000060579 2614 ntAPPRIS P1 BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
Pcdha1Q91Y21 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha1Q91Y21 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha1Q91Y21 Gucd1-211ENSMUST00000219774 806 ntTSL 3 BASIC19.92■□□□□ 0.78
Pcdha1Q91Y21 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha1Q91Y21 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
Pcdha1Q91Y21 S100a6-201ENSMUST00000001051 731 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Gm38205-201ENSMUST00000192243 258 ntBASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Krtcap3-205ENSMUST00000201625 902 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 CT010467.1-202ENSMUST00000205406 714 ntBASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Tmem42-202ENSMUST00000213514 631 ntTSL 3 BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 CT025689.6-201ENSMUST00000224991 1104 ntBASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Spcs1-207ENSMUST00000228767 1008 ntBASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Gm10602-201ENSMUST00000098239 609 ntBASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Hsf1-204ENSMUST00000226872 2104 ntBASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Tnks2-201ENSMUST00000025729 6481 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
Pcdha1Q91Y21 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Zfp444-202ENSMUST00000108565 849 ntTSL 3 BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 C230062I16Rik-202ENSMUST00000207746 1022 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Tceanc2-201ENSMUST00000030362 935 ntAPPRIS P1 TSL 3 BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 2310034G01Rik-201ENSMUST00000189008 1373 ntAPPRIS P1 TSL 5 BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Trpc1-201ENSMUST00000053785 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
Pcdha1Q91Y21 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha1Q91Y21 Neurl4-213ENSMUST00000177476 4952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha1Q91Y21 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha1Q91Y21 Fkbp1a-201ENSMUST00000044011 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha1Q91Y21 Dxo-201ENSMUST00000046244 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha1Q91Y21 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
Pcdha1Q91Y21 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Tmem203-201ENSMUST00000104998 854 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Cox4i1-201ENSMUST00000034276 745 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Ptpmt1-203ENSMUST00000125001 3183 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
Pcdha1Q91Y21 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
Retrieved 100 of 76,532 protein–RNA pairs in 22 ms