Protein–RNA interactions for Protein: Q8R370

Ushbp1, Usher syndrome type-1C protein-binding protein 1, mousemouse

Predictions only

Length 680 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ushbp1Q8R370 Znhit6-201ENSMUST00000098534 2339 ntAPPRIS P3 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Gm4553-201ENSMUST00000168049 714 ntAPPRIS ALT2 BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Gm10033-202ENSMUST00000211874 928 ntBASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Zbtb11os1-201ENSMUST00000186480 1350 ntBASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Kcnc3-207ENSMUST00000209177 2960 ntAPPRIS ALT2 TSL 5 BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 D830050J10Rik-202ENSMUST00000203858 1813 ntBASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 5730507C01Rik-202ENSMUST00000177778 2542 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
Ushbp1Q8R370 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ushbp1Q8R370 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ushbp1Q8R370 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
Ushbp1Q8R370 Gm15298-201ENSMUST00000145916 1212 ntTSL 5 BASIC21.42■■□□□ 1.02
Ushbp1Q8R370 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.42■■□□□ 1.02
Ushbp1Q8R370 AC165080.2-201ENSMUST00000217491 1530 ntBASIC21.42■■□□□ 1.02
Ushbp1Q8R370 Hrh3-201ENSMUST00000056480 2706 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
Ushbp1Q8R370 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Spcs1-201ENSMUST00000186131 1005 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Gm42778-201ENSMUST00000199644 553 ntBASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Parp12-201ENSMUST00000038398 3231 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Prpf19-201ENSMUST00000025642 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Rnf146-203ENSMUST00000160372 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Plin1-202ENSMUST00000178257 1841 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Slc35f4-202ENSMUST00000123534 2748 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
Ushbp1Q8R370 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Sirt1-201ENSMUST00000020257 3905 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Mall-201ENSMUST00000028856 2006 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Abhd8-201ENSMUST00000008094 1978 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 5730507C01Rik-201ENSMUST00000063216 2431 ntAPPRIS P3 TSL 1 (best) BASIC21.4■■□□□ 1.02
Ushbp1Q8R370 Sqstm1-202ENSMUST00000102774 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ushbp1Q8R370 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ushbp1Q8R370 Cyb561-201ENSMUST00000019734 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
Ushbp1Q8R370 Tatdn2-201ENSMUST00000089018 3096 ntAPPRIS P3 TSL 1 (best) BASIC21.39■■□□□ 1.01
Ushbp1Q8R370 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.39■■□□□ 1.01
Ushbp1Q8R370 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ushbp1Q8R370 Ncoa5-202ENSMUST00000121377 2930 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Ushbp1Q8R370 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Wbp1-201ENSMUST00000032111 1419 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Tcp11-201ENSMUST00000042692 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Gpx1-202ENSMUST00000191997 787 ntTSL 2 BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
Ushbp1Q8R370 Sept7-201ENSMUST00000115272 2533 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Scube1-202ENSMUST00000043634 5161 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Gm12216-203ENSMUST00000121435 655 ntAPPRIS ALT2 TSL 5 BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Pianp-204ENSMUST00000160704 1116 ntAPPRIS P2 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 H2-Ke6-201ENSMUST00000045467 965 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Hunk-201ENSMUST00000065856 5009 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Kcnq2-203ENSMUST00000081528 2382 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
Ushbp1Q8R370 Csnk1a1-210ENSMUST00000170862 2259 ntAPPRIS ALT1 TSL 5 BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Gm32699-201ENSMUST00000221728 1988 ntBASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Zfp523-202ENSMUST00000073534 2654 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Nfix-201ENSMUST00000076715 1403 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
Ushbp1Q8R370 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Zfp467-201ENSMUST00000101443 599 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 AV026068-204ENSMUST00000186214 633 ntTSL 2 BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 AC124603.1-201ENSMUST00000223843 308 ntBASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Sap30-201ENSMUST00000034022 1178 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 5033430I15Rik-201ENSMUST00000038032 729 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
Ushbp1Q8R370 AU022751-201ENSMUST00000101698 1838 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Ushbp1Q8R370 Fam91a1-201ENSMUST00000037270 5560 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 76,532 protein–RNA pairs in 14.7 ms