Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Rapgefl1-202ENSMUST00000107479 4855 ntAPPRIS P1 TSL 5 BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Gm16505-202ENSMUST00000220976 1626 ntTSL 5 BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Smim10l2a-201ENSMUST00000068106 2393 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Lmo1-201ENSMUST00000036992 1282 ntAPPRIS P3 TSL 1 (best) BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Arhgap44-202ENSMUST00000093001 2256 ntTSL 2 BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
Brf1Q8CFK2 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Zbtb7c-202ENSMUST00000167921 2147 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Eif2b4-202ENSMUST00000114603 1966 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Ciapin1-201ENSMUST00000034233 1807 ntAPPRIS P1 TSL 5 BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Camkk2-202ENSMUST00000196742 1084 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Lefty1-201ENSMUST00000037361 1620 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Gnpda1-201ENSMUST00000063814 2289 ntAPPRIS P1 TSL 1 (best) BASIC23.11■■□□□ 1.29
Brf1Q8CFK2 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Fgfr3-202ENSMUST00000087820 2630 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Ppp4r1l-ps-204ENSMUST00000140992 367 ntTSL 3 BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Gm20421-201ENSMUST00000153344 672 ntTSL 3 BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Ptrh1-201ENSMUST00000066352 952 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Rpl13-201ENSMUST00000000756 780 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Cpne2-201ENSMUST00000048653 2342 ntAPPRIS P2 TSL 1 (best) BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
Brf1Q8CFK2 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Gm26507-201ENSMUST00000181838 1410 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Gal3st3-201ENSMUST00000061169 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Sumo2-205ENSMUST00000121185 911 ntTSL 3 BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Gm7860-201ENSMUST00000121190 879 ntBASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Crnde-206ENSMUST00000179421 773 ntTSL 3 BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Gins3-202ENSMUST00000212434 654 ntTSL 2 BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Tmem171-201ENSMUST00000064347 1161 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
Brf1Q8CFK2 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Psme4-201ENSMUST00000041231 6491 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Hpca-201ENSMUST00000030572 1525 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Mprip-202ENSMUST00000072031 8718 ntAPPRIS P4 TSL 1 (best) BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Rasgef1a-201ENSMUST00000164960 3284 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Serbp1-216ENSMUST00000205106 1288 ntTSL 5 BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Gm45168-202ENSMUST00000206461 1069 ntTSL 5 BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Slc11a1-211ENSMUST00000187516 1893 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
Brf1Q8CFK2 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
Brf1Q8CFK2 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
Brf1Q8CFK2 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Brf1Q8CFK2 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Brf1Q8CFK2 Whamm-201ENSMUST00000165460 3069 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Brf1Q8CFK2 Meis3-205ENSMUST00000176506 1839 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Brf1Q8CFK2 Atmin-201ENSMUST00000109099 4877 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
Brf1Q8CFK2 A930001C03Rik-204ENSMUST00000154407 1402 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
Brf1Q8CFK2 Gm10129-202ENSMUST00000193100 1316 ntBASIC23.07■■□□□ 1.28
Brf1Q8CFK2 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Mms22l-205ENSMUST00000138567 1350 ntTSL 2 BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Spry1-202ENSMUST00000108107 2773 ntAPPRIS P1 TSL 1 (best) BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Gm11175-202ENSMUST00000211380 408 ntTSL 3 BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 1700017B05Rik-204ENSMUST00000215298 1023 ntAPPRIS ALT2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Mfap4-201ENSMUST00000040522 939 ntAPPRIS ALT2 TSL 2 BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Gm9988-201ENSMUST00000069786 435 ntBASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Elf2-212ENSMUST00000194641 5919 ntAPPRIS P3 TSL 5 BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
Brf1Q8CFK2 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Gm38205-201ENSMUST00000192243 258 ntBASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Arl6ip4-201ENSMUST00000031351 1192 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Carm1-202ENSMUST00000115394 3320 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Ubxn2a-201ENSMUST00000020962 2696 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Ogfod2-202ENSMUST00000119269 1474 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
Brf1Q8CFK2 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Twist2-202ENSMUST00000186075 2525 ntAPPRIS P1 BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Pole4-204ENSMUST00000160281 648 ntAPPRIS ALT1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Rab6b-202ENSMUST00000189134 716 ntTSL 3 BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 5031439G07Rik-203ENSMUST00000165743 5032 ntTSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Nudt3-201ENSMUST00000025050 2193 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Lamp1-201ENSMUST00000033824 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
Brf1Q8CFK2 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Il23a-201ENSMUST00000026449 1360 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Cdh4-203ENSMUST00000108911 1208 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Wdfy1-202ENSMUST00000113510 704 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Wdfy1-203ENSMUST00000113511 704 ntTSL 5 BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Kdm3b-201ENSMUST00000043775 6363 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Wdfy1-201ENSMUST00000048820 717 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Nrxn2-208ENSMUST00000137166 6314 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
Brf1Q8CFK2 Aen-202ENSMUST00000107423 2230 ntAPPRIS P3 TSL 5 BASIC23.02■■□□□ 1.28
Brf1Q8CFK2 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Brf1Q8CFK2 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
Brf1Q8CFK2 Reep4-203ENSMUST00000226563 1444 ntBASIC23.02■■□□□ 1.28
Brf1Q8CFK2 Rchy1-201ENSMUST00000031345 1967 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms