Protein–RNA interactions for Protein: Q8C6K9

Col6a6, Collagen alpha-6(VI) chain, mousemouse

Predictions only

Length 2,265 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a6Q8C6K9 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 Dyrk2-201ENSMUST00000004281 6129 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 Ppm1b-201ENSMUST00000080217 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 Pgap3-205ENSMUST00000128897 1264 ntTSL 5 BASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 Gm13509-201ENSMUST00000119733 1308 ntBASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 March11-203ENSMUST00000152841 1365 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
Col6a6Q8C6K9 Smim1-212ENSMUST00000146543 839 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Krtap5-1-202ENSMUST00000188274 742 ntBASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Rnf19b-206ENSMUST00000168461 2532 ntAPPRIS P2 TSL 5 BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Ercc6l2-208ENSMUST00000144763 1820 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Epb41l4b-203ENSMUST00000095076 6746 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Acsl3-203ENSMUST00000134566 2492 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Ccdc124-201ENSMUST00000007865 1356 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
Col6a6Q8C6K9 Gm38399-201ENSMUST00000112103 1645 ntTSL 2 BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Myo1b-202ENSMUST00000046390 5052 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Kcnq5-206ENSMUST00000173404 2775 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Serf1-204ENSMUST00000151821 570 ntTSL 2 BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Prss32-201ENSMUST00000061725 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
Col6a6Q8C6K9 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Zfp64-202ENSMUST00000109161 1009 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Unc50-203ENSMUST00000118059 1179 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Ubxn2a-203ENSMUST00000142867 2146 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Gm2559-201ENSMUST00000201323 363 ntBASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Arhgef33-211ENSMUST00000225658 473 ntBASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Snapc3-202ENSMUST00000071544 942 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Edn2-201ENSMUST00000030384 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Gm45121-201ENSMUST00000205396 1153 ntTSL 5 BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Ubl3-202ENSMUST00000164904 2001 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
Col6a6Q8C6K9 Mfn1-201ENSMUST00000091257 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 Smn1-202ENSMUST00000091321 223 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 Prdm13-201ENSMUST00000076206 2993 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 Mras-201ENSMUST00000035045 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Col6a6Q8C6K9 1110065P20Rik-203ENSMUST00000137769 659 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Col6a6Q8C6K9 Gm37055-201ENSMUST00000191866 133 ntBASIC17.27■□□□□ 0.35
Col6a6Q8C6K9 Tmem80-206ENSMUST00000133012 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Col6a6Q8C6K9 Rragc-201ENSMUST00000030399 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Noc2l-201ENSMUST00000179543 2785 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Gm12504-201ENSMUST00000120860 2231 ntBASIC17.26■□□□□ 0.35
Col6a6Q8C6K9 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Mapk11-201ENSMUST00000088823 2440 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 1810026B05Rik-203ENSMUST00000184587 5738 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Gm6802-201ENSMUST00000167843 1983 ntBASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Gm13563-202ENSMUST00000150375 851 ntTSL 3 BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Gm16998-201ENSMUST00000181899 1230 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Gm19610-201ENSMUST00000202894 408 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Gm45890-201ENSMUST00000212043 1026 ntTSL 5 BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Celf6-201ENSMUST00000034840 2765 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 A230052G05Rik-201ENSMUST00000050921 2302 ntBASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Smpdl3a-201ENSMUST00000020022 1961 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Smurf2-202ENSMUST00000103067 5290 ntTSL 5 BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Spock1-201ENSMUST00000172326 1320 ntAPPRIS P3 TSL 5 BASIC17.25■□□□□ 0.35
Col6a6Q8C6K9 Pabpn1-205ENSMUST00000141446 912 ntAPPRIS ALT2 TSL 3 BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Creb1-207ENSMUST00000187811 1255 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Zfp787-204ENSMUST00000207628 576 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Alg9-201ENSMUST00000034561 2873 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Sox17-208ENSMUST00000195555 1977 ntTSL 5 BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Chtop-207ENSMUST00000107346 1321 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Col6a6Q8C6K9 Acvrl1-206ENSMUST00000121718 1906 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Psmd6-201ENSMUST00000022256 1387 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Hoxd1-201ENSMUST00000047793 1862 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Gm12896-201ENSMUST00000118430 226 ntBASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Usp21-203ENSMUST00000111306 2185 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Col6a6Q8C6K9 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Gm7860-201ENSMUST00000121190 879 ntBASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC17.22■□□□□ 0.35
Col6a6Q8C6K9 Vkorc1-203ENSMUST00000206053 606 ntTSL 3 BASIC17.22■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 12.1 ms