Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Chtop-202ENSMUST00000049937 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Gm7514-201ENSMUST00000209475 934 ntBASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Dcbld1-201ENSMUST00000069004 3024 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Trim47Q8C0E3 Tmem164-206ENSMUST00000112896 5224 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 D830036C21Rik-201ENSMUST00000207444 453 ntTSL 3 BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 Dnpep-204ENSMUST00000185797 2510 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
Trim47Q8C0E3 Sstr1-201ENSMUST00000044299 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Oaf-201ENSMUST00000034512 2526 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 B930094E09Rik-201ENSMUST00000164667 1240 ntAPPRIS P1 BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Rab3il1-201ENSMUST00000113161 2225 ntAPPRIS P3 TSL 5 BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Mgat1-213ENSMUST00000167400 3151 ntAPPRIS P1 TSL 5 BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Ildr2-204ENSMUST00000192732 2263 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
Trim47Q8C0E3 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Zdhhc5-201ENSMUST00000035840 4706 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 H19-202ENSMUST00000136359 2286 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Spg7-211ENSMUST00000153285 2481 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Trmt61a-202ENSMUST00000168338 2131 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
Trim47Q8C0E3 Sra1-201ENSMUST00000001415 2061 ntAPPRIS P4 TSL 5 BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Smad2-205ENSMUST00000168423 2857 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Snhg6-203ENSMUST00000182580 473 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Stx6-209ENSMUST00000195302 955 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Klhl8-201ENSMUST00000031254 3193 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Tm9sf3-201ENSMUST00000025989 6144 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Trim47Q8C0E3 En2-201ENSMUST00000036177 3539 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim47Q8C0E3 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim47Q8C0E3 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim47Q8C0E3 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim47Q8C0E3 Pigt-202ENSMUST00000117066 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Trim47Q8C0E3 Golga7-201ENSMUST00000051094 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
Trim47Q8C0E3 Fyn-204ENSMUST00000126486 2495 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Gm37352-201ENSMUST00000193908 2181 ntBASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Nfe2l3-203ENSMUST00000160133 1125 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Neo1-202ENSMUST00000214547 5414 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Gm3667-201ENSMUST00000171906 2053 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 6030419C18Rik-201ENSMUST00000085658 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Trim47Q8C0E3 Magi2-206ENSMUST00000197443 6578 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Rian-206ENSMUST00000182119 329 ntTSL 3 BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Mrpl52-204ENSMUST00000199195 463 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Dvl3-203ENSMUST00000171572 2493 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Hcn2-201ENSMUST00000020581 3089 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Papd7-202ENSMUST00000198607 4750 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Zbtb4-203ENSMUST00000108640 4067 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Trim47Q8C0E3 Cd24a-201ENSMUST00000058714 1816 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Eif2b4-203ENSMUST00000166769 1878 ntTSL 5 BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Gm13534-201ENSMUST00000121169 513 ntBASIC21.18■□□□□ 0.98
Trim47Q8C0E3 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 Ube2d-ps-204ENSMUST00000137510 1846 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Trim47Q8C0E3 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim47Q8C0E3 Golph3-202ENSMUST00000226517 2359 ntBASIC21.17■□□□□ 0.98
Trim47Q8C0E3 Gm29257-201ENSMUST00000186115 639 ntBASIC21.17■□□□□ 0.98
Trim47Q8C0E3 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim47Q8C0E3 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC21.17■□□□□ 0.98
Trim47Q8C0E3 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Trim47Q8C0E3 Klhdc3-202ENSMUST00000165007 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Trim47Q8C0E3 Atp2b2-208ENSMUST00000205052 5658 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Trim47Q8C0E3 Zfp444-203ENSMUST00000108566 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 16.4 ms