Protein–RNA interactions for Protein: Q6T3U4

Npc1l1, Niemann-Pick C1-like protein 1, mousemouse

Predictions only

Length 1,333 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Npc1l1Q6T3U4 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
Npc1l1Q6T3U4 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC23.03■■□□□ 1.28
Npc1l1Q6T3U4 Magi2-205ENSMUST00000197354 4785 ntAPPRIS ALT2 TSL 5 BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Qsox2-201ENSMUST00000036187 2559 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Rab43-203ENSMUST00000078647 4605 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Ndufb2-202ENSMUST00000119379 455 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Gm7860-201ENSMUST00000121190 879 ntBASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Gm12441-201ENSMUST00000121806 588 ntBASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 B130046B21Rik-201ENSMUST00000181510 2216 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
Npc1l1Q6T3U4 9130221H12Rik-201ENSMUST00000169914 1465 ntTSL 1 (best) BASIC23.02■■□□□ 1.27
Npc1l1Q6T3U4 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Samd10-201ENSMUST00000060173 2164 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 1700030C12Rik-201ENSMUST00000101462 858 ntTSL 5 BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Gm10653-202ENSMUST00000139570 835 ntBASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Mir5133-201ENSMUST00000174955 77 ntBASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Gm39115-201ENSMUST00000211350 699 ntAPPRIS P1 BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Spsb3-203ENSMUST00000117890 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
Npc1l1Q6T3U4 Hexa-201ENSMUST00000026262 1996 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Nab2-202ENSMUST00000099157 2311 ntTSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Syde2-201ENSMUST00000039517 5495 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Gm38205-201ENSMUST00000192243 258 ntBASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Neurl4-202ENSMUST00000108617 4892 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Sfrp5-201ENSMUST00000018966 1900 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
Npc1l1Q6T3U4 Fblim1-202ENSMUST00000105784 3036 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Rnpep-201ENSMUST00000074357 2171 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Hyal2-207ENSMUST00000195752 2062 ntAPPRIS P2 TSL 5 BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Tsc22d4-205ENSMUST00000110985 790 ntAPPRIS ALT2 TSL 2 BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Tgfbr3l-201ENSMUST00000110993 1075 ntAPPRIS P1 TSL 5 BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Nespas-201ENSMUST00000143738 1083 ntBASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Ahsa2-201ENSMUST00000020529 3023 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Kis2-201ENSMUST00000133214 1717 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Htra3-201ENSMUST00000087629 2750 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Kcne1l-201ENSMUST00000134825 1543 ntAPPRIS P1 BASIC22.99■■□□□ 1.27
Npc1l1Q6T3U4 Zfp3-201ENSMUST00000060444 2061 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Npc1l1Q6T3U4 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC22.98■■□□□ 1.27
Npc1l1Q6T3U4 Cbfb-201ENSMUST00000052209 2883 ntAPPRIS P3 TSL 1 (best) BASIC22.98■■□□□ 1.27
Npc1l1Q6T3U4 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
Npc1l1Q6T3U4 Gm13534-201ENSMUST00000121169 513 ntBASIC22.98■■□□□ 1.27
Npc1l1Q6T3U4 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
Npc1l1Q6T3U4 Lrp3-202ENSMUST00000122409 4147 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Mgll-205ENSMUST00000150180 1312 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Zfp629-207ENSMUST00000134446 670 ntTSL 1 (best) BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Cldn3-201ENSMUST00000094245 1259 ntAPPRIS P1 BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Cdc42bpb-201ENSMUST00000041965 6714 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Kndc1-202ENSMUST00000121839 2210 ntTSL 2 BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Npc1l1Q6T3U4 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 1810010K12Rik-201ENSMUST00000070378 1324 ntBASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Phlpp1-201ENSMUST00000061047 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Ddost-201ENSMUST00000030538 2120 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Tex30-212ENSMUST00000152239 1046 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 2810405F15Rik-201ENSMUST00000195368 932 ntBASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.27
Npc1l1Q6T3U4 Trim72-201ENSMUST00000081042 1755 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
Npc1l1Q6T3U4 Hoxb6-201ENSMUST00000000704 1321 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.27
Npc1l1Q6T3U4 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Tfam-203ENSMUST00000121685 899 ntAPPRIS ALT2 TSL 2 BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Rabac1-203ENSMUST00000205871 986 ntTSL 1 (best) BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Rab34-209ENSMUST00000207728 567 ntTSL 2 BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Gm4968-201ENSMUST00000071458 858 ntBASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC22.95■■□□□ 1.26
Npc1l1Q6T3U4 H2-Q7-201ENSMUST00000071951 1406 ntAPPRIS P2 TSL 1 (best) BASIC22.94■■□□□ 1.26
Npc1l1Q6T3U4 H2-Q7-203ENSMUST00000078205 1419 ntTSL 5 BASIC22.94■■□□□ 1.26
Npc1l1Q6T3U4 Rela-201ENSMUST00000025867 2716 ntAPPRIS P1 TSL 1 (best) BASIC22.94■■□□□ 1.26
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms