Protein–RNA interactions for Protein: Q6PE01

Snrnp40, U5 small nuclear ribonucleoprotein 40 kDa protein, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Snrnp40Q6PE01 Gm13647-201ENSMUST00000154654 622 ntTSL 5 BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Cxxc4-201ENSMUST00000166288 1290 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Gm37035-201ENSMUST00000194809 2148 ntBASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Gm2559-201ENSMUST00000201323 363 ntBASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Cmc1-202ENSMUST00000215799 531 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Dync1i1-203ENSMUST00000115556 2718 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Rhob-201ENSMUST00000067384 2349 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
Snrnp40Q6PE01 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Slc12a2-201ENSMUST00000115366 6520 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Gm13836-201ENSMUST00000121159 501 ntBASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Aebp2-203ENSMUST00000095350 2575 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Scn1b-203ENSMUST00000211945 1501 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
Snrnp40Q6PE01 Rnf111-204ENSMUST00000213647 4961 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Snrnp40Q6PE01 Cyp4f13-204ENSMUST00000139353 1389 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Snrnp40Q6PE01 Cnnm1-201ENSMUST00000165311 5037 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
Snrnp40Q6PE01 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Snrnp40Q6PE01 Ccnd2-202ENSMUST00000201066 983 ntTSL 2 BASIC16.9■□□□□ 0.3
Snrnp40Q6PE01 1700026D11Rik-201ENSMUST00000126910 2033 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
Snrnp40Q6PE01 Gm12504-201ENSMUST00000120860 2231 ntBASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Gart-202ENSMUST00000120450 1865 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Fgf8-202ENSMUST00000026241 1168 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Hs2st1-201ENSMUST00000043325 6177 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Spsb3-209ENSMUST00000168265 1953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
Snrnp40Q6PE01 Insc-208ENSMUST00000169913 2321 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Gm11769-201ENSMUST00000140273 1657 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Gm6802-201ENSMUST00000167843 1983 ntBASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Rab28-205ENSMUST00000202913 863 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Aprt-204ENSMUST00000212093 723 ntTSL 2 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Slc39a7-203ENSMUST00000169397 2107 ntAPPRIS P1 TSL 5 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Esx1-202ENSMUST00000113066 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Cnrip1-201ENSMUST00000058159 1654 ntAPPRIS P1 TSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Fbxl3-204ENSMUST00000132004 2534 ntTSL 1 (best) BASIC16.88■□□□□ 0.29
Snrnp40Q6PE01 Mfsd4b2-201ENSMUST00000045526 2285 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Cdkl3-202ENSMUST00000063321 2008 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Stx18-201ENSMUST00000031008 1471 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 AC124392.1-201ENSMUST00000225172 5324 ntBASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 4932443I19Rik-204ENSMUST00000214337 1212 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Fgf2os-201ENSMUST00000153785 1441 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Mgrn1-201ENSMUST00000023159 3293 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
Snrnp40Q6PE01 Tmem143-201ENSMUST00000069772 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Tmcc1-202ENSMUST00000088896 5838 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Creb1-203ENSMUST00000171164 1287 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Dio3-201ENSMUST00000097228 1449 ntBASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Sirt1-203ENSMUST00000120239 4430 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 E530011L22Rik-202ENSMUST00000216791 2007 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
Snrnp40Q6PE01 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Ttc32-202ENSMUST00000219470 1645 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Fam60a-202ENSMUST00000081956 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Gm19426-201ENSMUST00000181711 726 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Pds5a-209ENSMUST00000201948 8934 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Clybl-201ENSMUST00000026625 1231 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Naxe-201ENSMUST00000029708 908 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
Snrnp40Q6PE01 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 AL672049.1-201ENSMUST00000197943 91 ntBASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Atp23-201ENSMUST00000026504 903 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Fxn-201ENSMUST00000081333 1114 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Csrp2-201ENSMUST00000020403 1384 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Vti1b-201ENSMUST00000055262 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
Snrnp40Q6PE01 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
Retrieved 100 of 76,532 protein–RNA pairs in 16.6 ms