Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Zfp692-202ENSMUST00000153510 1887 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
Col11a1Q61245 Gm10167-201ENSMUST00000150411 1479 ntBASIC21.8■■□□□ 1.08
Col11a1Q61245 Gas2l1-202ENSMUST00000056649 2847 ntAPPRIS P3 TSL 5 BASIC21.8■■□□□ 1.08
Col11a1Q61245 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC21.8■■□□□ 1.08
Col11a1Q61245 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col11a1Q61245 Tpm1-208ENSMUST00000113689 904 ntTSL 5 BASIC21.8■■□□□ 1.08
Col11a1Q61245 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
Col11a1Q61245 Tlcd1-203ENSMUST00000108338 714 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Col11a1Q61245 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC21.79■■□□□ 1.08
Col11a1Q61245 Tcta-202ENSMUST00000192886 1094 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
Col11a1Q61245 Mrps12-201ENSMUST00000056078 722 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col11a1Q61245 Trim3-202ENSMUST00000106789 2841 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
Col11a1Q61245 Gm15378-201ENSMUST00000121894 207 ntBASIC21.78■■□□□ 1.08
Col11a1Q61245 Cldn14-205ENSMUST00000177648 1266 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
Col11a1Q61245 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC21.78■■□□□ 1.08
Col11a1Q61245 Gm43799-201ENSMUST00000201845 579 ntBASIC21.78■■□□□ 1.08
Col11a1Q61245 Fip1l1-202ENSMUST00000113534 2140 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col11a1Q61245 Speg-203ENSMUST00000113588 1078 ntTSL 5 BASIC21.78■■□□□ 1.08
Col11a1Q61245 Snca-201ENSMUST00000114268 1280 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col11a1Q61245 Fau-203ENSMUST00000179142 736 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col11a1Q61245 Wrnip1-201ENSMUST00000021832 2633 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
Col11a1Q61245 Dbf4-201ENSMUST00000002368 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC21.77■■□□□ 1.08
Col11a1Q61245 Kcnn4-203ENSMUST00000205626 461 ntTSL 5 BASIC21.77■■□□□ 1.08
Col11a1Q61245 AC122465.1-201ENSMUST00000220813 1209 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Ctage5-203ENSMUST00000170992 2785 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
Col11a1Q61245 Ntf5-201ENSMUST00000058879 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
Col11a1Q61245 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC21.77■■□□□ 1.07
Col11a1Q61245 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 AC061963.1-203ENSMUST00000213473 453 ntTSL 3 BASIC21.76■■□□□ 1.07
Col11a1Q61245 AC140264.2-202ENSMUST00000218746 817 ntBASIC21.76■■□□□ 1.07
Col11a1Q61245 Mrpl21-202ENSMUST00000025745 1138 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 1700020N01Rik-201ENSMUST00000057341 1062 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 Gm9987-201ENSMUST00000069768 567 ntBASIC21.76■■□□□ 1.07
Col11a1Q61245 Best2-202ENSMUST00000209322 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 Plk5-202ENSMUST00000105351 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 Gm11527-201ENSMUST00000153795 596 ntTSL 2 BASIC21.76■■□□□ 1.07
Col11a1Q61245 Plk5-201ENSMUST00000039836 2112 ntAPPRIS P3 TSL 2 BASIC21.76■■□□□ 1.07
Col11a1Q61245 Mrps28-201ENSMUST00000042148 783 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
Col11a1Q61245 Slc10a3-201ENSMUST00000037967 2023 ntAPPRIS P2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Arrdc4-202ENSMUST00000118110 1129 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC21.75■■□□□ 1.07
Col11a1Q61245 Stard6-203ENSMUST00000168249 1167 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Trp73os-201ENSMUST00000143429 2192 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
Col11a1Q61245 Fam189a2-201ENSMUST00000096164 2547 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
Col11a1Q61245 Gm43672-201ENSMUST00000199072 1731 ntBASIC21.74■■□□□ 1.07
Col11a1Q61245 Ankrd39-202ENSMUST00000194894 664 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col11a1Q61245 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col11a1Q61245 Cmtm7-201ENSMUST00000035009 993 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col11a1Q61245 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col11a1Q61245 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
Col11a1Q61245 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Col11a1Q61245 Cntfr-203ENSMUST00000102961 1995 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
Col11a1Q61245 Gm37035-201ENSMUST00000194809 2148 ntBASIC21.74■■□□□ 1.07
Col11a1Q61245 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
Col11a1Q61245 Rcor3-203ENSMUST00000192128 1578 ntAPPRIS P3 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 4930554C24Rik-202ENSMUST00000216019 1159 ntTSL 5 BASIC21.73■■□□□ 1.07
Col11a1Q61245 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Agpat5-201ENSMUST00000033847 2841 ntAPPRIS ALT2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Pitx2-202ENSMUST00000042587 2271 ntAPPRIS ALT1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Rex1bd-201ENSMUST00000075175 671 ntAPPRIS P2 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Pcgf6-201ENSMUST00000026032 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC21.73■■□□□ 1.07
Col11a1Q61245 Impdh1-201ENSMUST00000078155 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
Col11a1Q61245 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col11a1Q61245 Ihh-201ENSMUST00000164097 2468 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col11a1Q61245 Gm11713-201ENSMUST00000139941 523 ntTSL 3 BASIC21.72■■□□□ 1.07
Col11a1Q61245 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
Col11a1Q61245 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col11a1Q61245 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col11a1Q61245 Qpct-201ENSMUST00000040789 1924 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
Col11a1Q61245 Paqr3-201ENSMUST00000069453 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Socs2-214ENSMUST00000172070 2153 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
Col11a1Q61245 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col11a1Q61245 Gm45337-201ENSMUST00000210537 1267 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col11a1Q61245 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Ezh2-201ENSMUST00000081721 2787 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
Col11a1Q61245 Gm3164-201ENSMUST00000168866 1945 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
Col11a1Q61245 K230015D01Rik-201ENSMUST00000211969 1516 ntBASIC21.71■■□□□ 1.07
Col11a1Q61245 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC21.71■■□□□ 1.07
Col11a1Q61245 Iars2-202ENSMUST00000110974 2431 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Col11a1Q61245 Exosc3-201ENSMUST00000030003 1077 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
Retrieved 100 of 76,532 protein–RNA pairs in 18.7 ms