Protein–RNA interactions for Protein: Q5R1I0

Trav6d-4, T cell receptor alpha variable 6D-4 (Fragment), mousemouse

Predictions only

Length 115 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trav6d-4Q5R1I0 Sept5-201ENSMUST00000096987 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
Trav6d-4Q5R1I0 Lpcat3-201ENSMUST00000004381 2281 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav6d-4Q5R1I0 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav6d-4Q5R1I0 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.17
Trav6d-4Q5R1I0 Gm32699-201ENSMUST00000221728 1988 ntBASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Gm8773-201ENSMUST00000101627 1268 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Gm13146-201ENSMUST00000118508 780 ntBASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 1700125G02Rik-201ENSMUST00000154947 519 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Mpc1-208ENSMUST00000155364 958 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Mpig6b-202ENSMUST00000174190 729 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Gm37179-201ENSMUST00000194862 823 ntBASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 CT010467.1-202ENSMUST00000205406 714 ntBASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 A730056A06Rik-202ENSMUST00000206959 526 ntTSL 3 BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Gm26571-205ENSMUST00000223215 591 ntTSL 3 BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Spint1-203ENSMUST00000110817 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
Trav6d-4Q5R1I0 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Barx2-201ENSMUST00000116615 1968 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Srsf10-203ENSMUST00000102544 2225 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Npr3-205ENSMUST00000228603 2437 ntAPPRIS ALT2 BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Snrpd3-203ENSMUST00000220229 442 ntTSL 3 BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Fcrlb-201ENSMUST00000094337 1284 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Gm12524-201ENSMUST00000143109 1583 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 St3gal4-201ENSMUST00000034537 2095 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
Trav6d-4Q5R1I0 Cdkl3-204ENSMUST00000109077 2605 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Stx1a-201ENSMUST00000005509 2162 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Ccdc34-201ENSMUST00000028580 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Polg2-201ENSMUST00000021060 1506 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Mlf2-201ENSMUST00000032214 1451 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Prcd-205ENSMUST00000178875 1227 ntTSL 5 BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Cystm1-201ENSMUST00000050584 831 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Sds-201ENSMUST00000066540 1207 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Hs3st4-201ENSMUST00000106437 3189 ntAPPRIS P1 TSL 3 BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Plekhh1-201ENSMUST00000039928 6439 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
Trav6d-4Q5R1I0 Gdf11-201ENSMUST00000026408 4062 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Lpar3-201ENSMUST00000039164 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Arl4d-201ENSMUST00000039388 1382 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Gfra4-205ENSMUST00000110239 810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Gm9780-201ENSMUST00000184272 350 ntTSL 2 BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Areg-201ENSMUST00000031325 1215 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
Trav6d-4Q5R1I0 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Speg-206ENSMUST00000122266 917 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Gm44899-202ENSMUST00000209433 511 ntTSL 5 BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Hoxc12-201ENSMUST00000055562 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Jkamp-201ENSMUST00000057257 1292 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Astn2-202ENSMUST00000084496 4675 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Nfe2-201ENSMUST00000075192 1697 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Mark2-202ENSMUST00000032557 4488 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
Trav6d-4Q5R1I0 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Irx2-201ENSMUST00000074372 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Phc2-202ENSMUST00000106079 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Gm11627-201ENSMUST00000107080 585 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 4930413G21Rik-201ENSMUST00000205998 993 ntBASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Tysnd1-201ENSMUST00000020284 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Siah1b-201ENSMUST00000037928 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
Trav6d-4Q5R1I0 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 4930467K11Rik-201ENSMUST00000180831 723 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Gm4881-201ENSMUST00000206705 1152 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Nudt14-202ENSMUST00000221397 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Wasl-202ENSMUST00000041737 1298 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Tmem53-201ENSMUST00000062824 991 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
Trav6d-4Q5R1I0 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
Trav6d-4Q5R1I0 Gpatch2-201ENSMUST00000044812 1639 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
Trav6d-4Q5R1I0 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
Retrieved 100 of 76,532 protein–RNA pairs in 35.6 ms