Protein–RNA interactions for Protein: Q5QNQ9

Col27a1, Collagen alpha-1(XXVII) chain, mousemouse

Predictions only

Length 1,845 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col27a1Q5QNQ9 Gfer-201ENSMUST00000046839 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col27a1Q5QNQ9 Ccdc92-201ENSMUST00000036206 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
Col27a1Q5QNQ9 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col27a1Q5QNQ9 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
Col27a1Q5QNQ9 Wipi2-202ENSMUST00000110778 1959 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
Col27a1Q5QNQ9 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.83■□□□□ 0.6
Col27a1Q5QNQ9 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
Col27a1Q5QNQ9 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC18.83■□□□□ 0.6
Col27a1Q5QNQ9 Ell3-201ENSMUST00000028679 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
Col27a1Q5QNQ9 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Mtfmt-201ENSMUST00000074792 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Atxn7l2-201ENSMUST00000102633 3044 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Zmynd19-202ENSMUST00000148042 1103 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Gm27741-201ENSMUST00000185060 237 ntBASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Gm21362-201ENSMUST00000194272 928 ntBASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Terf2-202ENSMUST00000068421 2667 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
Col27a1Q5QNQ9 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Rint1-204ENSMUST00000117783 560 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Zfp428-203ENSMUST00000177205 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Smim22-201ENSMUST00000178155 429 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Prrg2-201ENSMUST00000007981 1295 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Cbln2-204ENSMUST00000169470 2201 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Prpsap2-201ENSMUST00000004955 1837 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Psmd4-202ENSMUST00000107237 1332 ntAPPRIS P3 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Rfx8-202ENSMUST00000151913 2008 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Atf7ip2-204ENSMUST00000119023 1048 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Gm5577-203ENSMUST00000153372 815 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Gm28374-201ENSMUST00000162374 728 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Alkbh1-212ENSMUST00000185301 408 ntBASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 A430033K04Rik-204ENSMUST00000200521 1110 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Calml4-206ENSMUST00000215870 803 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Btg1-202ENSMUST00000218953 668 ntTSL 2 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Lce1m-201ENSMUST00000029520 874 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Nsfl1c-203ENSMUST00000103160 1369 ntTSL 5 BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Cisd2-202ENSMUST00000120988 1363 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 Slc15a4-201ENSMUST00000031367 2732 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Col27a1Q5QNQ9 AC165249.1-201ENSMUST00000220031 1599 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Capg-202ENSMUST00000114071 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Meg3-207ENSMUST00000143836 1896 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Bend6-201ENSMUST00000062289 2487 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Smarcd3-208ENSMUST00000195943 1712 ntTSL 5 BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Smarcd3-201ENSMUST00000030791 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Btbd2-202ENSMUST00000126980 2449 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
Col27a1Q5QNQ9 Puf60-202ENSMUST00000100527 1878 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 D3Ertd751e-205ENSMUST00000120167 773 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Gm20635-201ENSMUST00000176473 1287 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Pthlh-202ENSMUST00000204197 1281 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Bcl7c-205ENSMUST00000205977 891 ntTSL 2 BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Fkbp3-201ENSMUST00000021332 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Tpsb2-201ENSMUST00000069616 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Klc3-204ENSMUST00000108459 1849 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Gm43672-201ENSMUST00000199072 1731 ntBASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Meis3-201ENSMUST00000002495 1731 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Tcf7l1-202ENSMUST00000114053 1888 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Cst3-201ENSMUST00000028938 860 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
Col27a1Q5QNQ9 Gm15043-201ENSMUST00000118843 1543 ntBASIC18.78■□□□□ 0.6
Col27a1Q5QNQ9 Kif1bp-206ENSMUST00000162525 2311 ntTSL 5 BASIC18.78■□□□□ 0.6
Col27a1Q5QNQ9 Sh3bp1-203ENSMUST00000089378 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col27a1Q5QNQ9 Alad-202ENSMUST00000107444 1247 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col27a1Q5QNQ9 Gm26643-201ENSMUST00000180854 1274 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
Col27a1Q5QNQ9 Dmrt3-201ENSMUST00000048935 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
Col27a1Q5QNQ9 5033417F24Rik-201ENSMUST00000181575 1787 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
Col27a1Q5QNQ9 Zfpl1-201ENSMUST00000025707 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col27a1Q5QNQ9 Mcrip2-201ENSMUST00000026828 816 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col27a1Q5QNQ9 Tsr3-201ENSMUST00000063574 1192 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col27a1Q5QNQ9 Dpysl3-201ENSMUST00000025379 2106 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col27a1Q5QNQ9 Atg3-201ENSMUST00000023343 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
Col27a1Q5QNQ9 Cul4a-202ENSMUST00000121426 1044 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
Col27a1Q5QNQ9 Gm6659-201ENSMUST00000174752 547 ntBASIC18.77■□□□□ 0.59
Col27a1Q5QNQ9 Gm16042-201ENSMUST00000204813 1247 ntBASIC18.77■□□□□ 0.59
Col27a1Q5QNQ9 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col27a1Q5QNQ9 Hsbp1-201ENSMUST00000034300 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
Col27a1Q5QNQ9 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Dus1l-203ENSMUST00000106135 1863 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Smim12-201ENSMUST00000142029 1022 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 1700025A08Rik-201ENSMUST00000200753 609 ntBASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Gm42882-201ENSMUST00000201788 506 ntTSL 3 BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Gm11492-201ENSMUST00000060360 1972 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 K230010J24Rik-204ENSMUST00000187868 1810 ntAPPRIS P1 TSL 5 BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
Col27a1Q5QNQ9 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.75■□□□□ 0.59
Col27a1Q5QNQ9 Gm6728-201ENSMUST00000178117 1065 ntBASIC18.75■□□□□ 0.59
Col27a1Q5QNQ9 Scamp4-202ENSMUST00000180350 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col27a1Q5QNQ9 Acy3-201ENSMUST00000054030 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col27a1Q5QNQ9 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
Col27a1Q5QNQ9 2200002D01Rik-201ENSMUST00000032808 1466 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
Col27a1Q5QNQ9 Gtf2a2-204ENSMUST00000119905 622 ntTSL 2 BASIC18.74■□□□□ 0.59
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms