Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 B3gnt2-202ENSMUST00000062844 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Gm42900-201ENSMUST00000197184 2167 ntBASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Dlgap2-209ENSMUST00000152652 3842 ntAPPRIS P4 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Zfp346-202ENSMUST00000159147 1146 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Gm9767-201ENSMUST00000041011 1193 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Ttc36-201ENSMUST00000044694 888 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Hras-202ENSMUST00000097957 1199 ntAPPRIS P1 TSL 2 BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Srcap-202ENSMUST00000098025 1257 ntTSL 5 BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Stk3-201ENSMUST00000018476 2914 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Foxj3-206ENSMUST00000138845 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Hdgfl3-201ENSMUST00000026094 2865 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Ldb1-201ENSMUST00000026252 1718 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Polr3h-201ENSMUST00000023113 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Trim40Q3UWA4 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Gabra4-205ENSMUST00000199357 2407 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Dyrk1b-203ENSMUST00000172761 2018 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Kansl1l-201ENSMUST00000068168 4459 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Vegfa-211ENSMUST00000167860 975 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Vegfa-213ENSMUST00000217017 1179 ntAPPRIS P4 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Ddrgk1-201ENSMUST00000089559 1238 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Dhx15-205ENSMUST00000199321 2550 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Col4a3bp-202ENSMUST00000109444 5285 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Sec61a2-202ENSMUST00000102981 2448 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Miga1-201ENSMUST00000068243 2689 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Msantd3-203ENSMUST00000107704 1597 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Trim40Q3UWA4 Anks1b-217ENSMUST00000182550 1868 ntTSL 5 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 BC017158-201ENSMUST00000033044 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Mon2-202ENSMUST00000073792 9301 ntAPPRIS ALT2 TSL 5 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Schip1-201ENSMUST00000029346 2201 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Chst7-201ENSMUST00000044138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Gm45606-201ENSMUST00000209836 2795 ntBASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Ube2e3-202ENSMUST00000121433 1235 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Fam98c-209ENSMUST00000164589 1293 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Gm29735-201ENSMUST00000209599 660 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Ppp1r3f-201ENSMUST00000115742 3066 ntAPPRIS P3 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Gm44832-201ENSMUST00000208849 2303 ntBASIC17.9■□□□□ 0.46
Trim40Q3UWA4 1700003E16Rik-202ENSMUST00000203203 2070 ntTSL 2 BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Eomes-202ENSMUST00000111763 2869 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Map2k2-202ENSMUST00000105331 1556 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Trim40Q3UWA4 Hoxa10-202ENSMUST00000125581 2565 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Trim40Q3UWA4 1700028E10Rik-201ENSMUST00000181114 2034 ntTSL 1 (best) BASIC17.89■□□□□ 0.46
Trim40Q3UWA4 Gls-204ENSMUST00000114513 4966 ntAPPRIS P3 TSL 5 BASIC17.89■□□□□ 0.46
Trim40Q3UWA4 Cpne7-201ENSMUST00000037900 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Kcnip2-208ENSMUST00000161886 693 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Gpx7-202ENSMUST00000184609 331 ntTSL 3 BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Gm35161-201ENSMUST00000221765 941 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Stim2-204ENSMUST00000201469 4892 ntAPPRIS ALT2 TSL 5 BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Myd88-201ENSMUST00000035092 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Ssc4d-204ENSMUST00000111153 2745 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Htr6-201ENSMUST00000068036 1362 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Zdhhc13-201ENSMUST00000118927 2410 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Dixdc1-207ENSMUST00000121634 2420 ntTSL 5 BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Gpr162-204ENSMUST00000204667 2855 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
Trim40Q3UWA4 Dlgap2-203ENSMUST00000133298 4503 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Spint1-202ENSMUST00000110816 1913 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Hbs1l-202ENSMUST00000061324 1998 ntTSL 3 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Mast4-205ENSMUST00000166726 5968 ntAPPRIS ALT2 TSL 5 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Nags-201ENSMUST00000055409 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Pgam5-202ENSMUST00000112505 2098 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 AA386476-201ENSMUST00000098781 1665 ntBASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Cyth2-202ENSMUST00000107729 2519 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Dolk-201ENSMUST00000100219 2104 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Tsc22d1-203ENSMUST00000101618 1043 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Zfp629-208ENSMUST00000151107 583 ntTSL 3 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Gm40881-201ENSMUST00000223397 166 ntBASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Rabac1-201ENSMUST00000076961 899 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Slc30a9-201ENSMUST00000113676 5648 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Barx1-201ENSMUST00000021813 1399 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Mgme1-203ENSMUST00000110028 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Ube2d2a-201ENSMUST00000167406 2393 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Crlf2-203ENSMUST00000200284 1405 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Dmtn-210ENSMUST00000228824 2377 ntBASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Art1-201ENSMUST00000033300 1425 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Cdkn1c-201ENSMUST00000037287 1901 ntAPPRIS P3 TSL 1 (best) BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC17.88■□□□□ 0.45
Trim40Q3UWA4 Exog-202ENSMUST00000164213 2627 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Psme3-201ENSMUST00000019470 2664 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Gm13830-204ENSMUST00000149609 1851 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Txnrd2-201ENSMUST00000115604 1235 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Gadd45a-207ENSMUST00000204369 716 ntTSL 5 BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Pparg-202ENSMUST00000171644 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Trim40Q3UWA4 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 53.8 ms