Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Nrn1-202ENSMUST00000122286 691 ntTSL 3 BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Mpc2-201ENSMUST00000027853 1025 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Id1-201ENSMUST00000038368 934 ntAPPRIS P2 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Slc35f4-201ENSMUST00000074368 1931 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 Rfx5-205ENSMUST00000107260 2355 ntAPPRIS P1 TSL 5 BASIC24.56■■□□□ 1.52
Ddb1Q3U1J4 C1galt1-201ENSMUST00000040159 6092 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Gm2399-201ENSMUST00000104944 225 ntBASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Zpbp2-205ENSMUST00000107513 1240 ntAPPRIS ALT2 TSL 5 BASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Josd2-205ENSMUST00000120852 727 ntAPPRIS P1 TSL 3 BASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Xpa-201ENSMUST00000030013 955 ntAPPRIS P2 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Gdf1-201ENSMUST00000207684 1349 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Lbx1-201ENSMUST00000099401 2484 ntAPPRIS P1 TSL 1 (best) BASIC24.55■■□□□ 1.52
Ddb1Q3U1J4 Pbx2-201ENSMUST00000038149 3068 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Gm26971-201ENSMUST00000182423 1072 ntBASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Myoz1-201ENSMUST00000090469 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Cebpa-202ENSMUST00000205391 2161 ntTSL 5 BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Arid3c-202ENSMUST00000150809 1327 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Phb-204ENSMUST00000125172 1799 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Dusp7-201ENSMUST00000172306 3213 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
Ddb1Q3U1J4 Pacsin3-215ENSMUST00000168916 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Pacsin3-201ENSMUST00000028694 1862 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Noa1-201ENSMUST00000047860 2288 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Tor2a-201ENSMUST00000009707 1536 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Prr23a1-201ENSMUST00000170349 883 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 2510002D24Rik-204ENSMUST00000191388 995 ntTSL 5 BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Pomc-204ENSMUST00000219543 1043 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Grrp1-201ENSMUST00000060050 1226 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Thap11-201ENSMUST00000040445 1819 ntAPPRIS P1 BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
Ddb1Q3U1J4 Fam49b-202ENSMUST00000164532 1770 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 Mbnl3-203ENSMUST00000114876 2243 ntAPPRIS P2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 Polr1d-202ENSMUST00000110557 1137 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 Psmd4-201ENSMUST00000071664 1276 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 CT010444.2-201ENSMUST00000217877 1629 ntBASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 6820408C15Rik-201ENSMUST00000039961 1684 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 Cdx1-201ENSMUST00000025521 1750 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
Ddb1Q3U1J4 Tsc22d1-214ENSMUST00000177207 1476 ntTSL 3 BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Hck-203ENSMUST00000189688 2090 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 H2-K2-201ENSMUST00000174250 1049 ntBASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 AC153881.2-201ENSMUST00000214877 204 ntBASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Mdfi-202ENSMUST00000066368 1711 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Gm16262-201ENSMUST00000162306 1751 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 Tead4-202ENSMUST00000112157 1909 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
Ddb1Q3U1J4 AI480526-205ENSMUST00000160255 1095 ntTSL 5 BASIC24.5■■□□□ 1.51
Ddb1Q3U1J4 Arpc4-202ENSMUST00000171058 695 ntTSL 5 BASIC24.5■■□□□ 1.51
Ddb1Q3U1J4 1600023N17Rik-201ENSMUST00000196242 1007 ntBASIC24.5■■□□□ 1.51
Ddb1Q3U1J4 Fgfr1op2-202ENSMUST00000058245 918 ntTSL 2 BASIC24.5■■□□□ 1.51
Ddb1Q3U1J4 Gm26775-201ENSMUST00000180684 2197 ntTSL 5 BASIC24.5■■□□□ 1.51
Ddb1Q3U1J4 Ing1-201ENSMUST00000054399 2814 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Hlx-201ENSMUST00000048572 2278 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Rfesd-202ENSMUST00000167271 595 ntAPPRIS P1 TSL 2 BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Tomm20-202ENSMUST00000212771 458 ntTSL 2 BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Stx4a-201ENSMUST00000033075 1456 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 1700065D16Rik-204ENSMUST00000189348 1540 ntTSL 2 BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Rbmxl1-201ENSMUST00000049245 1695 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Gpr160-202ENSMUST00000108258 2139 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Vmn1r17-205ENSMUST00000228342 2230 ntAPPRIS P2 BASIC24.49■■□□□ 1.51
Ddb1Q3U1J4 Hck-202ENSMUST00000109799 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Zfp467-208ENSMUST00000114564 626 ntTSL 2 BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Tsen2-203ENSMUST00000130425 638 ntTSL 3 BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Dmrta2os-202ENSMUST00000141893 691 ntTSL 3 BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Serf1-205ENSMUST00000152286 465 ntTSL 3 BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Hck-201ENSMUST00000003370 2092 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Carm1-201ENSMUST00000034703 3220 ntAPPRIS P3 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Espn-202ENSMUST00000049305 1142 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Coa6-201ENSMUST00000059093 747 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Bmyc-201ENSMUST00000061483 983 ntAPPRIS P1 BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Derl3-201ENSMUST00000009236 1321 ntAPPRIS P2 TSL 1 (best) BASIC24.48■■□□□ 1.51
Ddb1Q3U1J4 Zmym3-202ENSMUST00000117637 1593 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Tm7sf2-202ENSMUST00000113543 1498 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Lmbrd1-202ENSMUST00000186096 688 ntTSL 2 BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Gm26709-202ENSMUST00000223049 819 ntTSL 5 BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Odf1-201ENSMUST00000081966 1105 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Ypel1-201ENSMUST00000035682 3322 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Mpz-201ENSMUST00000070758 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Apcdd1-201ENSMUST00000096554 2799 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
Ddb1Q3U1J4 Nt5c3b-204ENSMUST00000107398 1635 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Hook1-201ENSMUST00000030306 5517 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Gm45472-201ENSMUST00000211295 1426 ntTSL 5 BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Spsb3-204ENSMUST00000119829 1955 ntAPPRIS ALT2 TSL 2 BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Galr2-201ENSMUST00000055872 1940 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Pigp-202ENSMUST00000113906 745 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Gm20472-201ENSMUST00000174403 1240 ntBASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Gm20695-202ENSMUST00000176233 1012 ntAPPRIS P1 TSL 5 BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Sec11c-201ENSMUST00000025394 807 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Nrn1l-201ENSMUST00000060167 617 ntAPPRIS P3 TSL 1 (best) BASIC24.46■■□□□ 1.51
Ddb1Q3U1J4 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
Retrieved 100 of 76,532 protein–RNA pairs in 17.1 ms