Protein–RNA interactions for Protein: P43241

Cdx2, Homeobox protein CDX-2, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx2P43241 Mrps10-201ENSMUST00000060752 1109 ntTSL 5 BASIC18.27■□□□□ 0.52
Cdx2P43241 Gtf2h2-201ENSMUST00000066940 1065 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx2P43241 Zfp580-201ENSMUST00000069324 1096 ntAPPRIS P2 TSL 1 (best) BASIC18.27■□□□□ 0.52
Cdx2P43241 Cbln2-201ENSMUST00000068423 2475 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
Cdx2P43241 Ttc39a-203ENSMUST00000106619 1778 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
Cdx2P43241 Mpg-201ENSMUST00000020528 1737 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Ets1-202ENSMUST00000050797 1976 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Gm9934-201ENSMUST00000098303 2077 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Fbxl17-201ENSMUST00000024761 4925 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC18.26■□□□□ 0.51
Cdx2P43241 Gm22325-201ENSMUST00000158904 308 ntBASIC18.26■□□□□ 0.51
Cdx2P43241 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
Cdx2P43241 Map7-205ENSMUST00000214231 675 ntTSL 3 BASIC18.26■□□□□ 0.51
Cdx2P43241 Stmn1-201ENSMUST00000030636 1060 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Cck-201ENSMUST00000035120 691 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Kcnj12-202ENSMUST00000089184 2291 ntAPPRIS P3 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 Tmem86a-201ENSMUST00000010451 1831 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
Cdx2P43241 B430319F04Rik-201ENSMUST00000209731 2669 ntBASIC18.26■□□□□ 0.51
Cdx2P43241 Cobll1-204ENSMUST00000112430 4917 ntAPPRIS ALT2 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Gm30003-201ENSMUST00000200700 1433 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Rasgrf2-206ENSMUST00000216219 2115 ntTSL 5 BASIC18.25■□□□□ 0.51
Cdx2P43241 AC142113.1-201ENSMUST00000214931 801 ntTSL 5 BASIC18.25■□□□□ 0.51
Cdx2P43241 Smim15-206ENSMUST00000226042 1092 ntAPPRIS P1 BASIC18.25■□□□□ 0.51
Cdx2P43241 Nnat-201ENSMUST00000088484 458 ntTSL 2 BASIC18.25■□□□□ 0.51
Cdx2P43241 Rnaset2b-202ENSMUST00000179728 2448 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Atf5-202ENSMUST00000107893 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Notum-203ENSMUST00000106178 2012 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Klhdc10-202ENSMUST00000068259 5901 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Coq9-201ENSMUST00000034234 1789 ntAPPRIS P1 TSL 1 (best) BASIC18.25■□□□□ 0.51
Cdx2P43241 Wbp1-202ENSMUST00000113936 1314 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Lgi2-202ENSMUST00000199942 6273 ntAPPRIS ALT2 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Ptpn4-203ENSMUST00000163435 2365 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Slc35f4-204ENSMUST00000138884 1810 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Taf4-204ENSMUST00000227325 4380 ntAPPRIS ALT2 BASIC18.24■□□□□ 0.51
Cdx2P43241 Tbc1d2b-201ENSMUST00000041767 5956 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Ppp1r8-202ENSMUST00000105919 1090 ntAPPRIS ALT1 TSL 3 BASIC18.24■□□□□ 0.51
Cdx2P43241 Gm16141-201ENSMUST00000152073 790 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Prss21-201ENSMUST00000024928 1094 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Cfap20-201ENSMUST00000034249 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Wdr33-202ENSMUST00000082319 1152 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Tbc1d24-201ENSMUST00000024931 4894 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 Arrb2-205ENSMUST00000108568 1777 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
Cdx2P43241 AC152827.1-201ENSMUST00000221143 2189 ntBASIC18.24■□□□□ 0.51
Cdx2P43241 Polr2m-201ENSMUST00000034720 2200 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx2P43241 Cacnb3-202ENSMUST00000109150 2670 ntTSL 5 BASIC18.23■□□□□ 0.51
Cdx2P43241 Kcnn4-201ENSMUST00000171904 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx2P43241 Adap2-201ENSMUST00000021050 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx2P43241 Bnip1-201ENSMUST00000015725 1085 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx2P43241 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.23■□□□□ 0.51
Cdx2P43241 Hspe1-201ENSMUST00000075242 774 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx2P43241 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
Cdx2P43241 Cacnb1-203ENSMUST00000103144 2236 ntTSL 5 BASIC18.22■□□□□ 0.51
Cdx2P43241 Pptc7-201ENSMUST00000053426 4644 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx2P43241 Gnl1-201ENSMUST00000087200 2848 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx2P43241 Cracr2b-207ENSMUST00000170879 1158 ntAPPRIS ALT2 TSL 5 BASIC18.22■□□□□ 0.51
Cdx2P43241 Gm29241-201ENSMUST00000189260 1096 ntBASIC18.22■□□□□ 0.51
Cdx2P43241 Fam50b-201ENSMUST00000039605 1229 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx2P43241 Grin2c-202ENSMUST00000106554 4895 ntAPPRIS P1 TSL 5 BASIC18.22■□□□□ 0.51
Cdx2P43241 Tfap2e-201ENSMUST00000048194 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
Cdx2P43241 Cyp2r1-207ENSMUST00000211506 1887 ntTSL 5 BASIC18.22■□□□□ 0.51
Cdx2P43241 Prdm13-202ENSMUST00000095141 3173 ntAPPRIS P2 TSL 2 BASIC18.22■□□□□ 0.51
Cdx2P43241 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx2P43241 Ctdsp1-201ENSMUST00000027367 2876 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx2P43241 Chsy1-201ENSMUST00000036372 4176 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx2P43241 Ankrd33b-203ENSMUST00000110410 2070 ntAPPRIS P3 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx2P43241 Gm5643-201ENSMUST00000117081 966 ntBASIC18.21■□□□□ 0.51
Cdx2P43241 Gm21863-201ENSMUST00000179133 336 ntAPPRIS P1 BASIC18.21■□□□□ 0.51
Cdx2P43241 Gm2559-201ENSMUST00000201323 363 ntBASIC18.21■□□□□ 0.51
Cdx2P43241 Magi3-202ENSMUST00000121198 5912 ntAPPRIS ALT2 TSL 5 BASIC18.21■□□□□ 0.51
Cdx2P43241 Prrt1-201ENSMUST00000015620 1940 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
Cdx2P43241 Zcchc11-201ENSMUST00000043368 6054 ntAPPRIS P2 TSL 5 BASIC18.21■□□□□ 0.51
Cdx2P43241 Cpeb3-205ENSMUST00000126781 2095 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx2P43241 Hoxc6-201ENSMUST00000001711 1581 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
Cdx2P43241 Nrxn1-213ENSMUST00000172466 2477 ntTSL 5 BASIC18.21■□□□□ 0.5
Cdx2P43241 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Rilpl2-201ENSMUST00000031347 1391 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Tcerg1l-201ENSMUST00000160436 2565 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Cdx2P43241 Dnajb11-201ENSMUST00000004574 1927 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Lhx2-203ENSMUST00000143783 1696 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Tradd-201ENSMUST00000034359 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Atp8a1-204ENSMUST00000113652 854 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Gm26971-201ENSMUST00000182423 1072 ntBASIC18.2■□□□□ 0.5
Cdx2P43241 Gm29458-201ENSMUST00000187093 354 ntTSL 3 BASIC18.2■□□□□ 0.5
Cdx2P43241 Chpt1-202ENSMUST00000073783 852 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Tmem91-201ENSMUST00000079439 877 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC18.2■□□□□ 0.5
Cdx2P43241 Intu-201ENSMUST00000061590 1589 ntAPPRIS ALT2 TSL 2 BASIC18.2■□□□□ 0.5
Cdx2P43241 Porcn-202ENSMUST00000082320 1883 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Cdx2P43241 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx2P43241 Socs2-201ENSMUST00000020215 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx2P43241 Rpl27-202ENSMUST00000107249 732 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
Cdx2P43241 Gm17035-201ENSMUST00000170557 419 ntTSL 3 BASIC18.19■□□□□ 0.5
Cdx2P43241 Gm45822-201ENSMUST00000212231 259 ntTSL 3 BASIC18.19■□□□□ 0.5
Cdx2P43241 Aprt-201ENSMUST00000006764 849 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx2P43241 Ddx39b-201ENSMUST00000068056 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx2P43241 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx2P43241 Commd7-202ENSMUST00000109782 1343 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Cdx2P43241 Cdk13-201ENSMUST00000042365 5202 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms