Protein–RNA interactions for Protein: P18111

Cdx1, Homeobox protein CDX-1, mousemouse

Predictions only

Length 268 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdx1P18111 Tex264-202ENSMUST00000163441 1896 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Cdx1P18111 Fam118b-201ENSMUST00000059057 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Cdx1P18111 Fbxo4-201ENSMUST00000022791 1565 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
Cdx1P18111 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.04
Cdx1P18111 Foxp1-230ENSMUST00000177437 2468 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 Cavin3-201ENSMUST00000047040 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 C1qtnf4-201ENSMUST00000111466 1290 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 Dleu2-209ENSMUST00000182957 352 ntTSL 2 BASIC15.33■□□□□ 0.04
Cdx1P18111 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC15.33■□□□□ 0.04
Cdx1P18111 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 AC126028.2-201ENSMUST00000228100 1833 ntBASIC15.33■□□□□ 0.04
Cdx1P18111 Cdk19-201ENSMUST00000044672 5807 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 Lrrc43-203ENSMUST00000196809 2031 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
Cdx1P18111 4930500M09Rik-202ENSMUST00000194988 1563 ntBASIC15.32■□□□□ 0.04
Cdx1P18111 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Gm15202-201ENSMUST00000154188 393 ntTSL 3 BASIC15.32■□□□□ 0.04
Cdx1P18111 Gm21956-201ENSMUST00000179946 522 ntBASIC15.32■□□□□ 0.04
Cdx1P18111 Ankrd11-207ENSMUST00000212937 943 ntTSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 4930426I24Rik-202ENSMUST00000217797 1232 ntBASIC15.32■□□□□ 0.04
Cdx1P18111 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Akt2-205ENSMUST00000108344 4544 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Zfand2b-201ENSMUST00000027394 1316 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Chst1-201ENSMUST00000065797 2680 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Dynll2-204ENSMUST00000178105 2187 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Cdx1P18111 Mtrf1l-201ENSMUST00000019908 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Tmem55b-205ENSMUST00000160835 2755 ntAPPRIS P3 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC15.31■□□□□ 0.04
Cdx1P18111 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Fgfrl1-202ENSMUST00000112560 2318 ntTSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Hook2-203ENSMUST00000209764 2516 ntTSL 5 BASIC15.31■□□□□ 0.04
Cdx1P18111 Clta-204ENSMUST00000107849 1099 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Clta-205ENSMUST00000107851 1135 ntAPPRIS P4 TSL 2 BASIC15.31■□□□□ 0.04
Cdx1P18111 Rexo2-208ENSMUST00000216470 454 ntTSL 3 BASIC15.31■□□□□ 0.04
Cdx1P18111 Kcnt1-203ENSMUST00000114172 5219 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Tmem185a-202ENSMUST00000114630 1307 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Fndc5-201ENSMUST00000102600 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Trip10-205ENSMUST00000224885 2136 ntAPPRIS ALT2 BASIC15.31■□□□□ 0.04
Cdx1P18111 Mtmr1-201ENSMUST00000015358 4634 ntAPPRIS P2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 BC034090-204ENSMUST00000186156 4873 ntAPPRIS P5 TSL 5 BASIC15.31■□□□□ 0.04
Cdx1P18111 Nptxr-201ENSMUST00000023057 5004 ntAPPRIS ALT2 TSL 1 (best) BASIC15.31■□□□□ 0.04
Cdx1P18111 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Pxk-202ENSMUST00000112689 2840 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Cpsf4-202ENSMUST00000160422 1756 ntAPPRIS ALT1 TSL 5 BASIC15.3■□□□□ 0.04
Cdx1P18111 Tmem191c-213ENSMUST00000164950 1394 ntAPPRIS P1 TSL 3 BASIC15.3■□□□□ 0.04
Cdx1P18111 Krt24-201ENSMUST00000017255 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Ppp2r1b-206ENSMUST00000175645 1931 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Cdx1P18111 Endod1-203ENSMUST00000214236 419 ntAPPRIS ALT2 TSL 3 BASIC15.3■□□□□ 0.04
Cdx1P18111 Spast-202ENSMUST00000224711 2066 ntAPPRIS ALT2 BASIC15.3■□□□□ 0.04
Cdx1P18111 Shisa5-201ENSMUST00000026737 1834 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Bcl2l10-201ENSMUST00000034709 1220 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Gm10575-201ENSMUST00000097947 1671 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Rbpj-203ENSMUST00000113865 5440 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Ext2-212ENSMUST00000184931 2629 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Cdx1P18111 Slc39a5-202ENSMUST00000167859 2025 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Ntn5-202ENSMUST00000182750 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Nfib-206ENSMUST00000107248 3294 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Rbfox3-204ENSMUST00000106278 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Letm2-209ENSMUST00000210810 1538 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Ikbip-202ENSMUST00000020150 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Spr-203ENSMUST00000174769 1029 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 8430432A02Rik-201ENSMUST00000039080 1248 ntBASIC15.29■□□□□ 0.04
Cdx1P18111 Gm43702-201ENSMUST00000198772 2546 ntBASIC15.29■□□□□ 0.04
Cdx1P18111 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Mark3-201ENSMUST00000075281 3321 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Cys1-208ENSMUST00000189849 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Rasgrp1-201ENSMUST00000102534 5229 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Cdx1P18111 Bdh1-201ENSMUST00000089759 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Cdx1P18111 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 4930519A11Rik-201ENSMUST00000181381 1523 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Antxr1-201ENSMUST00000042025 5253 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 H13-204ENSMUST00000125366 5204 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Stmn4-204ENSMUST00000121955 1361 ntTSL 5 BASIC15.28■□□□□ 0.04
Cdx1P18111 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC15.28■□□□□ 0.04
Cdx1P18111 Larp1-201ENSMUST00000071487 6614 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Cdx1P18111 Sh3bp1-204ENSMUST00000109698 1923 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Ppp1r12b-203ENSMUST00000112163 828 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Cdx1P18111 Gm12821-201ENSMUST00000120022 600 ntBASIC15.28■□□□□ 0.04
Cdx1P18111 Cep97-205ENSMUST00000121703 609 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 2900079G21Rik-201ENSMUST00000139552 1139 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Appbp2os-202ENSMUST00000206972 447 ntBASIC15.28■□□□□ 0.04
Cdx1P18111 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC15.28■□□□□ 0.04
Cdx1P18111 Pbx1-201ENSMUST00000064438 1020 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Cnot11-201ENSMUST00000003219 3162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC15.28■□□□□ 0.04
Cdx1P18111 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Ism1-201ENSMUST00000099307 2944 ntTSL 5 BASIC15.28■□□□□ 0.04
Cdx1P18111 Sugct-201ENSMUST00000068545 1701 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Ddx59-201ENSMUST00000027655 2166 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Sox2-201ENSMUST00000099151 2057 ntAPPRIS P1 BASIC15.28■□□□□ 0.04
Cdx1P18111 Pip5k1c-202ENSMUST00000105327 2551 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
Cdx1P18111 Zfp764-201ENSMUST00000059199 2508 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Cdx1P18111 Sox30-201ENSMUST00000049038 2997 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms