Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Sdsl-201ENSMUST00000031594 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.11■□□□□ 0.49
Msx1P13297 Gga2-201ENSMUST00000033160 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
Msx1P13297 Bspry-202ENSMUST00000107449 2167 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Lmtk3-201ENSMUST00000072580 4807 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Msx1P13297 Itsn2-201ENSMUST00000062580 5987 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Msx1P13297 Elavl1-201ENSMUST00000098950 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Tmem64-201ENSMUST00000062684 4670 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Sephs1-202ENSMUST00000115019 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Kmt2b-201ENSMUST00000006470 8469 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Msx1P13297 Cers1-203ENSMUST00000165819 2728 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Tmem145-201ENSMUST00000108409 2298 ntAPPRIS P2 TSL 2 BASIC18.1■□□□□ 0.49
Msx1P13297 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Gm12441-201ENSMUST00000121806 588 ntBASIC18.1■□□□□ 0.49
Msx1P13297 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Ppp1r16a-201ENSMUST00000037551 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Msx1P13297 Fam105a-201ENSMUST00000100739 2867 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Pdpk1-205ENSMUST00000115411 1724 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Reep4-203ENSMUST00000226563 1444 ntBASIC18.09■□□□□ 0.49
Msx1P13297 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC18.09■□□□□ 0.49
Msx1P13297 Zfp653-201ENSMUST00000043922 2108 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Vgll2-201ENSMUST00000058347 966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Rcl1-201ENSMUST00000064393 1803 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC18.09■□□□□ 0.49
Msx1P13297 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Maf1-205ENSMUST00000160853 1651 ntAPPRIS P2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Msx1P13297 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Msx1P13297 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.49
Msx1P13297 Nsfl1c-202ENSMUST00000089140 1486 ntAPPRIS P3 TSL 5 BASIC18.08■□□□□ 0.49
Msx1P13297 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
Msx1P13297 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Msx1P13297 Six5-201ENSMUST00000049454 3007 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Msx1P13297 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msx1P13297 AC121965.1-201ENSMUST00000221422 861 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Msx1P13297 Gpx1-201ENSMUST00000082429 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msx1P13297 Zmiz2-201ENSMUST00000012612 4199 ntAPPRIS P2 TSL 5 BASIC18.08■□□□□ 0.48
Msx1P13297 AA386476-201ENSMUST00000098781 1665 ntBASIC18.08■□□□□ 0.48
Msx1P13297 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Msx1P13297 Rnf32-204ENSMUST00000160246 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msx1P13297 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Msx1P13297 Phospho1-201ENSMUST00000054173 1910 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
Msx1P13297 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Rora-202ENSMUST00000113624 2591 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Zdhhc4-201ENSMUST00000001900 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Pitx3-201ENSMUST00000026259 1380 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Gm10653-202ENSMUST00000139570 835 ntBASIC18.07■□□□□ 0.48
Msx1P13297 Zcrb1-208ENSMUST00000162160 850 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 2310068J16Rik-201ENSMUST00000188271 1124 ntBASIC18.07■□□□□ 0.48
Msx1P13297 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC18.07■□□□□ 0.48
Msx1P13297 Psmb5-201ENSMUST00000022803 899 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Ltk-202ENSMUST00000082130 2767 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Msx1P13297 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Zfp213-201ENSMUST00000095606 2672 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Bola3-207ENSMUST00000136501 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Fpgs-201ENSMUST00000028148 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC18.06■□□□□ 0.48
Msx1P13297 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC18.06■□□□□ 0.48
Msx1P13297 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Gm7514-201ENSMUST00000209475 934 ntBASIC18.06■□□□□ 0.48
Msx1P13297 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Stim2-201ENSMUST00000117661 4934 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Gm26660-201ENSMUST00000181582 2543 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Fkbp9-201ENSMUST00000031795 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Gprc5c-201ENSMUST00000021071 2200 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Msx1P13297 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Msx1P13297 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Msx1P13297 Nipsnap2-205ENSMUST00000186265 1600 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
Msx1P13297 Atoh8-201ENSMUST00000042646 2355 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Gm17098-201ENSMUST00000166507 628 ntTSL 5 BASIC18.05■□□□□ 0.48
Msx1P13297 Mettl26-205ENSMUST00000169308 1026 ntTSL 2 BASIC18.05■□□□□ 0.48
Msx1P13297 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC18.05■□□□□ 0.48
Msx1P13297 Ap3s1-204ENSMUST00000225520 957 ntBASIC18.05■□□□□ 0.48
Msx1P13297 Cox7c-202ENSMUST00000078764 433 ntTSL 2 BASIC18.05■□□□□ 0.48
Msx1P13297 Map2k2-207ENSMUST00000143517 2405 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC18.05■□□□□ 0.48
Msx1P13297 Ndufaf1-202ENSMUST00000110801 1478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Asphd1-203ENSMUST00000106340 1647 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Msx1P13297 Maz-203ENSMUST00000205568 2650 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Msx1P13297 Mir5133-201ENSMUST00000174955 77 ntBASIC18.04■□□□□ 0.48
Msx1P13297 Stum-202ENSMUST00000179826 601 ntAPPRIS ALT1 TSL 5 BASIC18.04■□□□□ 0.48
Msx1P13297 Hgfac-206ENSMUST00000202573 434 ntTSL 5 BASIC18.04■□□□□ 0.48
Msx1P13297 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
Msx1P13297 Socs2-213ENSMUST00000170690 2195 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
Msx1P13297 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC18.04■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 202.4 ms