Protein–RNA interactions for Protein: P11416

Rara, Retinoic acid receptor alpha, mousemouse

Predictions only

Length 462 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RaraP11416 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Rce1-201ENSMUST00000025823 1402 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
RaraP11416 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.68■□□□□ 0.9
RaraP11416 Etnk1-203ENSMUST00000204947 1791 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Gm43137-201ENSMUST00000198052 594 ntBASIC20.68■□□□□ 0.9
RaraP11416 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Pawr-202ENSMUST00000218332 870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Svbp-201ENSMUST00000030395 733 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 2810025M15Rik-201ENSMUST00000061537 1194 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Scand1-201ENSMUST00000079125 759 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Cldn23-201ENSMUST00000060128 1848 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
RaraP11416 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Shc2-201ENSMUST00000020564 3243 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
RaraP11416 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
RaraP11416 Gm21964-202ENSMUST00000213641 1649 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
RaraP11416 Xk-201ENSMUST00000015486 5076 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Smox-206ENSMUST00000110183 1159 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC20.67■□□□□ 0.9
RaraP11416 Ankra2-205ENSMUST00000150916 1028 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Gm20548-204ENSMUST00000174528 791 ntTSL 3 BASIC20.67■□□□□ 0.9
RaraP11416 0610039K10Rik-202ENSMUST00000184724 952 ntBASIC20.67■□□□□ 0.9
RaraP11416 Deptor-203ENSMUST00000100660 1377 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 2310015A10Rik-201ENSMUST00000180643 1399 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Clint1-201ENSMUST00000109260 3311 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Ltb4r2-201ENSMUST00000044554 1439 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Hoxd4-202ENSMUST00000111980 1494 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Rcor1-201ENSMUST00000084968 5684 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Slc35a3-201ENSMUST00000029569 5725 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
RaraP11416 Plin1-201ENSMUST00000032762 1916 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
RaraP11416 Slc39a5-201ENSMUST00000042666 1947 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 Lrrfip1-201ENSMUST00000068116 2050 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RaraP11416 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
RaraP11416 Clint1-202ENSMUST00000109261 3365 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
RaraP11416 Hyi-205ENSMUST00000194248 936 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC20.66■□□□□ 0.9
RaraP11416 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.66■□□□□ 0.9
RaraP11416 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 Gm4737-201ENSMUST00000059524 2093 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
RaraP11416 Mchr1-201ENSMUST00000166855 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 Unc5b-201ENSMUST00000077925 5869 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
RaraP11416 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RaraP11416 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RaraP11416 Gm9885-202ENSMUST00000186234 2209 ntBASIC20.65■□□□□ 0.9
RaraP11416 Magi3-201ENSMUST00000064371 6640 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
RaraP11416 Olfm2-204ENSMUST00000217198 2005 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
RaraP11416 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
RaraP11416 Gm12251-201ENSMUST00000117893 792 ntBASIC20.65■□□□□ 0.9
RaraP11416 Tmem185a-201ENSMUST00000101506 2429 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
RaraP11416 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
RaraP11416 Matk-204ENSMUST00000120265 1618 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.9
RaraP11416 D16Ertd472e-202ENSMUST00000114219 1576 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
RaraP11416 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.64■□□□□ 0.89
RaraP11416 Rpap3-201ENSMUST00000023104 2260 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RaraP11416 Phf14-201ENSMUST00000090632 3985 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
RaraP11416 Gspt1-201ENSMUST00000080030 2898 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
RaraP11416 Yipf2-203ENSMUST00000180365 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
RaraP11416 Nexmif-201ENSMUST00000056502 5211 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
RaraP11416 Nubp1-201ENSMUST00000023146 2121 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Zfp771-201ENSMUST00000052509 1484 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Fzr1-205ENSMUST00000140901 3057 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Zfp746-203ENSMUST00000203609 3648 ntAPPRIS ALT2 TSL 5 BASIC20.63■□□□□ 0.89
RaraP11416 Bsg-205ENSMUST00000179781 1261 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Pcgf3-202ENSMUST00000112597 2169 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
RaraP11416 Gm21956-201ENSMUST00000179946 522 ntBASIC20.62■□□□□ 0.89
RaraP11416 4930519P11Rik-201ENSMUST00000181369 501 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RaraP11416 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC20.62■□□□□ 0.89
RaraP11416 St3gal3-201ENSMUST00000030263 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
RaraP11416 Ccdc3-201ENSMUST00000027988 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC20.61■□□□□ 0.89
RaraP11416 Cobll1-202ENSMUST00000102726 5031 ntAPPRIS P3 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Cobll1-203ENSMUST00000112429 5045 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
RaraP11416 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Hsdl1-201ENSMUST00000036049 3141 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Rcan3-201ENSMUST00000030606 5111 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Pde6d-203ENSMUST00000146220 879 ntTSL 2 BASIC20.61■□□□□ 0.89
RaraP11416 Prr3-204ENSMUST00000172900 439 ntTSL 2 BASIC20.61■□□□□ 0.89
RaraP11416 Gm7160-202ENSMUST00000188519 1027 ntBASIC20.61■□□□□ 0.89
RaraP11416 Med31-201ENSMUST00000021157 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Shisa4-201ENSMUST00000041240 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Lrig1-202ENSMUST00000101126 4951 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Mtmr14-201ENSMUST00000113146 2676 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
RaraP11416 Oxct2a-201ENSMUST00000102640 1760 ntAPPRIS P1 BASIC20.6■□□□□ 0.89
RaraP11416 Cdv3-ps-201ENSMUST00000169632 827 ntBASIC20.6■□□□□ 0.89
RaraP11416 Flvcr1-202ENSMUST00000191946 1216 ntBASIC20.6■□□□□ 0.89
RaraP11416 AC140930.3-201ENSMUST00000222935 274 ntBASIC20.6■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 31.6 ms