Protein–RNA interactions for Protein: O89116

Vti1a, Vesicle transport through interaction with t-SNAREs homolog 1A, mousemouse

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Vti1aO89116 Nxph4-201ENSMUST00000095266 1675 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
Vti1aO89116 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
Vti1aO89116 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Hoxa11os-201ENSMUST00000134512 1839 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 2410004B18Rik-201ENSMUST00000039571 1547 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Trp73-204ENSMUST00000105644 5042 ntAPPRIS P3 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Sp3os-201ENSMUST00000123087 583 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Uncx-202ENSMUST00000174792 1196 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Syap1-201ENSMUST00000033723 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
Vti1aO89116 Lacc1-201ENSMUST00000062789 2444 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Arhgap23-201ENSMUST00000093940 2409 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 C1qtnf12-201ENSMUST00000024338 1315 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Rfk-201ENSMUST00000025617 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Cetn3-201ENSMUST00000022009 1226 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Gm10306-201ENSMUST00000094969 533 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
Vti1aO89116 Dmrta2-201ENSMUST00000061187 2922 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Sfr1-201ENSMUST00000099353 1583 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
Vti1aO89116 E130307A14Rik-208ENSMUST00000145971 830 ntTSL 3 BASIC20.58■□□□□ 0.89
Vti1aO89116 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Vti1aO89116 Syt17-203ENSMUST00000203485 1932 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
Vti1aO89116 Strn3-201ENSMUST00000013130 3046 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
Vti1aO89116 Dtnb-216ENSMUST00000173736 2175 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
Vti1aO89116 Pcyt2-203ENSMUST00000106188 1486 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vti1aO89116 Polr2c-201ENSMUST00000109521 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vti1aO89116 Fxyd1-215ENSMUST00000206474 572 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vti1aO89116 Theg-202ENSMUST00000077433 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vti1aO89116 Pusl1-201ENSMUST00000097737 1243 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Vti1aO89116 Arfrp1-203ENSMUST00000127988 2447 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Vti1aO89116 Gm45015-201ENSMUST00000207943 1364 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Vti1aO89116 Mroh6-201ENSMUST00000184858 2216 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
Vti1aO89116 Ly6h-204ENSMUST00000127095 1336 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
Vti1aO89116 Zmym3-207ENSMUST00000120201 1859 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Cep170b-202ENSMUST00000101018 6641 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Mir5133-201ENSMUST00000174955 77 ntBASIC20.56■□□□□ 0.88
Vti1aO89116 Gar1-201ENSMUST00000029643 1271 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Rbks-201ENSMUST00000031018 1042 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Ick-201ENSMUST00000009972 873 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Impa2-201ENSMUST00000025403 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Kirrel3-202ENSMUST00000115148 2851 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
Vti1aO89116 Cnbp-208ENSMUST00000204653 2175 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Cnbp-201ENSMUST00000032138 2178 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Pank2-204ENSMUST00000150843 4266 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
Vti1aO89116 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC20.56■□□□□ 0.88
Vti1aO89116 Htatip2-202ENSMUST00000207895 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Gp1bb-202ENSMUST00000167388 1847 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
Vti1aO89116 Cyp4f15-201ENSMUST00000008801 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Tesmin-204ENSMUST00000151341 2013 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Med25-201ENSMUST00000003049 2619 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Tmem54-203ENSMUST00000106064 1066 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Gm17041-201ENSMUST00000163196 479 ntTSL 3 BASIC20.55■□□□□ 0.88
Vti1aO89116 Wtap-204ENSMUST00000159986 3187 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Tssk2-201ENSMUST00000055374 1387 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
Vti1aO89116 Traf3-203ENSMUST00000117269 6972 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Gm26682-201ENSMUST00000180850 1729 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
Vti1aO89116 Tead1-204ENSMUST00000106638 3047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Fezf2-201ENSMUST00000022262 2188 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC20.54■□□□□ 0.88
Vti1aO89116 Ypel3-204ENSMUST00000106359 469 ntTSL 5 BASIC20.54■□□□□ 0.88
Vti1aO89116 Med30-201ENSMUST00000037115 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Snrpc-201ENSMUST00000071006 870 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Ppp6r2-202ENSMUST00000226221 2559 ntBASIC20.54■□□□□ 0.88
Vti1aO89116 Arrb1-210ENSMUST00000179755 7135 ntTSL 5 BASIC20.54■□□□□ 0.88
Vti1aO89116 Arrb1-202ENSMUST00000098266 7132 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Stoml2-201ENSMUST00000030169 1874 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Vti1aO89116 Gm6802-201ENSMUST00000167843 1983 ntBASIC20.54■□□□□ 0.88
Vti1aO89116 Rbm38-204ENSMUST00000173393 2071 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
Vti1aO89116 Pdzd8-201ENSMUST00000099274 7076 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Vti1aO89116 Shox2-201ENSMUST00000029422 3079 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 Man2c1os-201ENSMUST00000125333 1910 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 Sort1-201ENSMUST00000102632 6796 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 Arl2bp-202ENSMUST00000109527 1133 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 Spr-202ENSMUST00000174286 775 ntTSL 2 BASIC20.53■□□□□ 0.88
Vti1aO89116 Gm44732-201ENSMUST00000208055 635 ntTSL 3 BASIC20.53■□□□□ 0.88
Vti1aO89116 Fam228b-205ENSMUST00000218575 1281 ntAPPRIS ALT2 TSL 2 BASIC20.53■□□□□ 0.88
Vti1aO89116 Rgs19-202ENSMUST00000108769 1460 ntTSL 2 BASIC20.53■□□□□ 0.88
Vti1aO89116 Derl2-207ENSMUST00000171041 1466 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 Neurog1-201ENSMUST00000058475 1686 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
Vti1aO89116 Gm26837-201ENSMUST00000180821 2110 ntTSL 5 BASIC20.53■□□□□ 0.88
Vti1aO89116 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 1700123O20Rik-201ENSMUST00000038539 1843 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Vti1aO89116 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.53■□□□□ 0.88
Vti1aO89116 Cdkn3-203ENSMUST00000227149 1952 ntBASIC20.52■□□□□ 0.88
Vti1aO89116 Tsen54-202ENSMUST00000106481 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vti1aO89116 Gm4969-202ENSMUST00000141380 1892 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
Vti1aO89116 Pnldc1-201ENSMUST00000163394 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vti1aO89116 Rpusd3-202ENSMUST00000113092 1269 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
Vti1aO89116 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC20.52■□□□□ 0.88
Vti1aO89116 1700003N22Rik-201ENSMUST00000194834 808 ntBASIC20.52■□□□□ 0.88
Vti1aO89116 Prmt1-205ENSMUST00000207659 945 ntTSL 5 BASIC20.52■□□□□ 0.88
Vti1aO89116 Prmt1-201ENSMUST00000045325 1071 ntTSL 5 BASIC20.52■□□□□ 0.88
Retrieved 100 of 76,532 protein–RNA pairs in 18.4 ms