Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Wnt11-205ENSMUST00000167303 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Slc25a38-201ENSMUST00000035106 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Exosc4-201ENSMUST00000059045 1796 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Zfp703-201ENSMUST00000127097 587 ntTSL 2 BASIC15.86■□□□□ 0.13
Hmgb3O54879 Gli3-204ENSMUST00000141194 466 ntTSL 2 BASIC15.86■□□□□ 0.13
Hmgb3O54879 Btbd6-206ENSMUST00000222209 644 ntTSL 3 BASIC15.86■□□□□ 0.13
Hmgb3O54879 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 C1qtnf5-203ENSMUST00000114818 1337 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Hmgb3O54879 Gnb2-201ENSMUST00000031726 1860 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Fxr2-201ENSMUST00000018909 2951 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Relb-202ENSMUST00000094762 2209 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Relb-203ENSMUST00000098754 2203 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
Hmgb3O54879 Atp2b2-201ENSMUST00000089003 7067 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Hmgb3O54879 Ubfd1-201ENSMUST00000033158 4849 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Dusp8-201ENSMUST00000039926 4804 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 D5Ertd579e-204ENSMUST00000140653 2014 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Glp1r-201ENSMUST00000114574 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Csnk1a1-201ENSMUST00000115246 1484 ntTSL 5 BASIC15.85■□□□□ 0.13
Hmgb3O54879 Ubtf-204ENSMUST00000107117 3258 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
Hmgb3O54879 Azi2-205ENSMUST00000133580 2156 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Acvrl1-202ENSMUST00000117984 1852 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
Hmgb3O54879 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Gm10420-201ENSMUST00000121713 882 ntBASIC15.85■□□□□ 0.13
Hmgb3O54879 Rnaset2a-201ENSMUST00000097420 1259 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Gyg-201ENSMUST00000118015 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
Hmgb3O54879 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Metrnl-201ENSMUST00000036742 1401 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Bcor-202ENSMUST00000065143 6839 ntAPPRIS P4 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Prkci-201ENSMUST00000108249 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
Hmgb3O54879 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Tpst2-201ENSMUST00000031287 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Kctd12-202ENSMUST00000184744 6057 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Hmgb3O54879 Tlcd1-201ENSMUST00000092880 2700 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Tbkbp1-203ENSMUST00000107614 2391 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
Hmgb3O54879 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Dio3-202ENSMUST00000173014 2030 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
Hmgb3O54879 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 4833418N17Rik-201ENSMUST00000064826 615 ntBASIC15.84■□□□□ 0.13
Hmgb3O54879 Tmem132c-201ENSMUST00000119026 5134 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Btbd11-203ENSMUST00000105307 5788 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC15.84■□□□□ 0.13
Hmgb3O54879 Gdf7-202ENSMUST00000220073 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 AC166356.1-201ENSMUST00000228236 1426 ntBASIC15.84■□□□□ 0.13
Hmgb3O54879 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Gm8098-201ENSMUST00000146985 1499 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Acot3-203ENSMUST00000223080 1545 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Arhgap42-201ENSMUST00000093893 6116 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
Hmgb3O54879 Gm26884-201ENSMUST00000181207 3074 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
Hmgb3O54879 Rbm18-201ENSMUST00000028251 2617 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Hmgb3O54879 Lingo1-203ENSMUST00000114256 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Hmgb3O54879 Gm10653-201ENSMUST00000132250 1232 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Gm10653-203ENSMUST00000156423 1232 ntTSL 5 BASIC15.83■□□□□ 0.12
Hmgb3O54879 Gm28529-202ENSMUST00000189675 670 ntTSL 2 BASIC15.83■□□□□ 0.12
Hmgb3O54879 Stk19-201ENSMUST00000077477 1120 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Adamtsl5-201ENSMUST00000095446 1957 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
Hmgb3O54879 Gna11-201ENSMUST00000043604 3414 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Otud5-201ENSMUST00000033494 4259 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Fgfr2-211ENSMUST00000120187 4311 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Tmem55b-209ENSMUST00000162957 1465 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Fbxo42-201ENSMUST00000030757 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
Hmgb3O54879 Agrn-206ENSMUST00000180572 6891 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
Hmgb3O54879 Notch3-201ENSMUST00000087723 8044 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Rap1b-201ENSMUST00000064667 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Eif3b-201ENSMUST00000100507 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Cdkn3-203ENSMUST00000227149 1952 ntBASIC15.82■□□□□ 0.12
Hmgb3O54879 Mex3b-201ENSMUST00000082237 3355 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Hmgb3O54879 Wipi1-203ENSMUST00000106689 1220 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Gm11175-201ENSMUST00000116172 543 ntBASIC15.82■□□□□ 0.12
Hmgb3O54879 Fam168b-204ENSMUST00000170092 941 ntTSL 5 BASIC15.82■□□□□ 0.12
Hmgb3O54879 Rp9-203ENSMUST00000215715 1499 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Ncor1-203ENSMUST00000069456 3171 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Atp2c1-201ENSMUST00000038118 4876 ntAPPRIS P3 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Dalrd3-201ENSMUST00000019183 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Htra2-201ENSMUST00000089645 1725 ntAPPRIS P2 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Dedd2-201ENSMUST00000058702 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Gabpa-201ENSMUST00000009120 4987 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
Hmgb3O54879 Nat8l-201ENSMUST00000056355 6529 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Tmem245-202ENSMUST00000107609 2643 ntAPPRIS P2 TSL 5 BASIC15.81■□□□□ 0.12
Hmgb3O54879 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
Hmgb3O54879 Rnf44-204ENSMUST00000125871 4292 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Gm28040-202ENSMUST00000184603 890 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
Hmgb3O54879 4933429H19Rik-202ENSMUST00000187361 995 ntBASIC15.81■□□□□ 0.12
Hmgb3O54879 Aatf-201ENSMUST00000018841 1822 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Gm43231-201ENSMUST00000202960 2258 ntBASIC15.81■□□□□ 0.12
Hmgb3O54879 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Rarb-207ENSMUST00000225921 2756 ntBASIC15.81■□□□□ 0.12
Hmgb3O54879 Rnaseh2c-201ENSMUST00000025864 1126 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Pianp-201ENSMUST00000032479 2250 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Stx18-202ENSMUST00000042146 1473 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Tmem132e-201ENSMUST00000054245 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Smad7-201ENSMUST00000026999 4278 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
Hmgb3O54879 Phldb3-204ENSMUST00000206422 2564 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
Hmgb3O54879 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
Retrieved 100 of 76,532 protein–RNA pairs in 22.5 ms