Protein–RNA interactions for Protein: O35492

Clk3, Dual specificity protein kinase CLK3, mousemouse

Predictions only

Length 638 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Clk3O35492 Rab34-202ENSMUST00000056241 1558 ntTSL 5 BASIC18.13■□□□□ 0.49
Clk3O35492 Atxn2-201ENSMUST00000051950 4472 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Kcns3-201ENSMUST00000055673 2933 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Zfp36l1-204ENSMUST00000219642 545 ntTSL 3 BASIC18.12■□□□□ 0.49
Clk3O35492 AC138214.1-201ENSMUST00000223838 420 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Clk3O35492 AC158777.2-201ENSMUST00000228787 398 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Clk3O35492 Dlg1-202ENSMUST00000064477 4663 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Atp11a-202ENSMUST00000091237 7443 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Spint2-201ENSMUST00000098604 1384 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
Clk3O35492 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
Clk3O35492 Donson-202ENSMUST00000114031 2147 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Clk3O35492 Ank1-207ENSMUST00000118733 8201 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Gm43231-201ENSMUST00000202960 2258 ntBASIC18.11■□□□□ 0.49
Clk3O35492 Snx4-201ENSMUST00000023502 2442 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Eif4h-205ENSMUST00000202622 2726 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Numbl-201ENSMUST00000079258 2760 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Ahcyl2-204ENSMUST00000115242 5152 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC18.11■□□□□ 0.49
Clk3O35492 BC004004-202ENSMUST00000120346 1297 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
Clk3O35492 Igfbp7-202ENSMUST00000163898 1200 ntAPPRIS P4 TSL 5 BASIC18.11■□□□□ 0.49
Clk3O35492 Gm7160-202ENSMUST00000188519 1027 ntBASIC18.11■□□□□ 0.49
Clk3O35492 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Cdkn3-203ENSMUST00000227149 1952 ntBASIC18.11■□□□□ 0.49
Clk3O35492 Nol9-202ENSMUST00000103197 2271 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Dmwd-202ENSMUST00000108479 2388 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Clk3O35492 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
Clk3O35492 Clcn4-206ENSMUST00000210594 2539 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
Clk3O35492 Ap1ar-201ENSMUST00000051737 2662 ntAPPRIS P1 TSL 3 BASIC18.11■□□□□ 0.49
Clk3O35492 Slc9a5-201ENSMUST00000073149 3499 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Vegfa-207ENSMUST00000142351 1973 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Sfmbt2-204ENSMUST00000114864 1901 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Ppp2r1b-209ENSMUST00000176349 1890 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
Clk3O35492 Gm10209-201ENSMUST00000203397 1607 ntBASIC18.1■□□□□ 0.49
Clk3O35492 Rfxap-204ENSMUST00000217267 696 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Ttc39b-201ENSMUST00000030205 842 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Gm9922-201ENSMUST00000066461 435 ntAPPRIS P1 BASIC18.1■□□□□ 0.49
Clk3O35492 Slc25a16-201ENSMUST00000044977 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Gfi1-201ENSMUST00000031205 2860 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Atf6b-201ENSMUST00000015605 2566 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Baiap2-202ENSMUST00000075180 3518 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
Clk3O35492 Ints8-202ENSMUST00000108318 3169 ntTSL 5 BASIC18.1■□□□□ 0.49
Clk3O35492 Nsmf-205ENSMUST00000114386 2685 ntTSL 5 BASIC18.09■□□□□ 0.49
Clk3O35492 Zfp644-204ENSMUST00000112696 5785 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
Clk3O35492 Tmem222-201ENSMUST00000105907 1484 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clk3O35492 Eif5a-202ENSMUST00000070996 1373 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clk3O35492 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Clk3O35492 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Clk3O35492 Ppa1-201ENSMUST00000020286 1364 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Clk3O35492 Plekha1-211ENSMUST00000151119 2397 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Clk3O35492 Vim-206ENSMUST00000193675 1777 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Clk3O35492 Prmt9-202ENSMUST00000118622 2768 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
Clk3O35492 Arpc5-202ENSMUST00000097536 1737 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Clk3O35492 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Clk3O35492 Minpp1-201ENSMUST00000025827 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Clk3O35492 Ehmt2-203ENSMUST00000097342 3934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Bola1-202ENSMUST00000107099 995 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Clk3O35492 Tmem9-202ENSMUST00000117950 847 ntAPPRIS P1 TSL 2 BASIC18.07■□□□□ 0.48
Clk3O35492 Bola1-201ENSMUST00000016087 729 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Gm20621-202ENSMUST00000176618 1234 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Bola1-203ENSMUST00000177442 692 ntAPPRIS P1 TSL 3 BASIC18.07■□□□□ 0.48
Clk3O35492 Gm27454-201ENSMUST00000185090 204 ntBASIC18.07■□□□□ 0.48
Clk3O35492 Trmt112-201ENSMUST00000088257 957 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Gpx4-201ENSMUST00000097227 995 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Paxip1-201ENSMUST00000002291 5850 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Clk3O35492 Tarbp1-201ENSMUST00000170518 6383 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Clk3O35492 Gm6085-201ENSMUST00000182774 1470 ntBASIC18.07■□□□□ 0.48
Clk3O35492 Chmp7-201ENSMUST00000036381 2649 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Kcnd3-202ENSMUST00000098761 7169 ntAPPRIS ALT1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Krtap5-3-202ENSMUST00000187512 1652 ntAPPRIS P2 BASIC18.06■□□□□ 0.48
Clk3O35492 Tifa-201ENSMUST00000054483 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Ezh2-204ENSMUST00000114618 2775 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Hs3st5-202ENSMUST00000167191 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Gm13429-202ENSMUST00000128242 692 ntTSL 3 BASIC18.06■□□□□ 0.48
Clk3O35492 Prodh-206ENSMUST00000139861 677 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 1700007K13Rik-201ENSMUST00000086370 812 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 St7l-201ENSMUST00000059271 5728 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Gm26795-201ENSMUST00000180993 1952 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Kdelr3-201ENSMUST00000010974 1414 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Aebp2-202ENSMUST00000087614 3727 ntAPPRIS P4 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Slc25a4-201ENSMUST00000034049 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Clk3O35492 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Clk3O35492 AC126028.2-201ENSMUST00000228100 1833 ntBASIC18.05■□□□□ 0.48
Clk3O35492 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC18.05■□□□□ 0.48
Clk3O35492 Mindy2-201ENSMUST00000049031 8081 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Clk3O35492 Polr3gl-204ENSMUST00000145001 607 ntTSL 3 BASIC18.05■□□□□ 0.48
Clk3O35492 Gm44866-201ENSMUST00000208774 391 ntTSL 2 BASIC18.05■□□□□ 0.48
Clk3O35492 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Clk3O35492 1700030C10Rik-201ENSMUST00000110971 1471 ntBASIC18.05■□□□□ 0.48
Clk3O35492 Rdh14-201ENSMUST00000020947 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Clk3O35492 Elac2-201ENSMUST00000071891 2771 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Clk3O35492 A530010L16Rik-201ENSMUST00000212007 2336 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Clk3O35492 C230037L18Rik-201ENSMUST00000136218 1886 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Clk3O35492 Csnk1a1-207ENSMUST00000166990 1860 ntTSL 5 BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms