Protein–RNA interactions for Protein: Q9R1C7

Prpf40a, Pre-mRNA-processing factor 40 homolog A, mousemouse

Known RBP Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Prpf40aQ9R1C7 Mast4-202ENSMUST00000164111 2350 ntTSL 2 BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Epdr1-201ENSMUST00000002885 2363 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Tnrc18-201ENSMUST00000151477 6487 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Sost-201ENSMUST00000001534 2066 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 1810022K09Rik-201ENSMUST00000108365 559 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Capn10-202ENSMUST00000117814 1268 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Gm26833-201ENSMUST00000180899 440 ntBASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Gm44731-201ENSMUST00000203086 542 ntTSL 3 BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Nol7-205ENSMUST00000222499 756 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Hes1-201ENSMUST00000023171 1468 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Baiap2l2-201ENSMUST00000165408 2100 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 AI115009-201ENSMUST00000181093 1853 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
Prpf40aQ9R1C7 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Bmpr1b-202ENSMUST00000098568 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Baiap2-205ENSMUST00000106233 2442 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Gfi1-203ENSMUST00000159164 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Epb41l4aos-201ENSMUST00000146010 430 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Tor2a-208ENSMUST00000177382 396 ntTSL 5 BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 AC137127.1-201ENSMUST00000213466 1078 ntBASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Hoxa5-201ENSMUST00000048794 1877 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Il17re-205ENSMUST00000203661 2118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Gm10571-201ENSMUST00000097869 1638 ntBASIC21.04■□□□□ 0.96
Prpf40aQ9R1C7 Cacul1-202ENSMUST00000111460 5561 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Fam83d-201ENSMUST00000029183 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Kirrel-201ENSMUST00000041732 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Gsx2-201ENSMUST00000040477 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Phax-202ENSMUST00000130163 1386 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Nfu1-202ENSMUST00000117583 950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Gm11421-201ENSMUST00000122124 294 ntBASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Gm13063-201ENSMUST00000132247 669 ntTSL 3 BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Far2os2-201ENSMUST00000149815 980 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Kiss1-204ENSMUST00000194044 583 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Gm21168-201ENSMUST00000199646 1096 ntBASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 AC154266.1-201ENSMUST00000223190 503 ntBASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Serp2-204ENSMUST00000228055 705 ntBASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Ninj1-201ENSMUST00000049022 1187 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Dapk1-207ENSMUST00000226059 5009 ntBASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Tbc1d25-201ENSMUST00000039892 2648 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Celf6-203ENSMUST00000118549 2973 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Cwh43-202ENSMUST00000065543 2316 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
Prpf40aQ9R1C7 Wnt10b-203ENSMUST00000226610 2217 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Taf4b-201ENSMUST00000169862 5149 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Maff-202ENSMUST00000163691 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Rab7-205ENSMUST00000113600 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Gm4285-201ENSMUST00000131222 902 ntTSL 2 BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Hyi-201ENSMUST00000006562 910 ntAPPRIS P1 TSL 5 BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Nat14-201ENSMUST00000047309 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Baiap2-201ENSMUST00000026436 2394 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.96
Prpf40aQ9R1C7 Fgf3-201ENSMUST00000105898 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Prpf40aQ9R1C7 Crh-201ENSMUST00000061294 1320 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
Prpf40aQ9R1C7 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Gapvd1-201ENSMUST00000028224 5695 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Dtnb-225ENSMUST00000174663 2381 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Lrch3-201ENSMUST00000023491 5536 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Ypel3-210ENSMUST00000170882 1050 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Gclm-206ENSMUST00000178826 1002 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Zfp706-201ENSMUST00000078976 4417 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Rin3-202ENSMUST00000101114 2394 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Sept7-202ENSMUST00000165594 2516 ntAPPRIS P2 TSL 5 BASIC21.01■□□□□ 0.95
Prpf40aQ9R1C7 Hnrnph3-202ENSMUST00000118898 2168 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Lhx8-201ENSMUST00000177846 2076 ntTSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Ebf3-201ENSMUST00000033378 4838 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 1700008J07Rik-201ENSMUST00000185351 2432 ntBASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Naglu-201ENSMUST00000001802 2560 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Luc7l2-201ENSMUST00000057692 2702 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Fam189a1-201ENSMUST00000119118 4801 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Dact2-201ENSMUST00000053218 2808 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Dennd2a-201ENSMUST00000036877 4468 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Prpf40aQ9R1C7 Naa30-205ENSMUST00000153488 4446 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Gm15751-201ENSMUST00000134552 1862 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Kcnip1-201ENSMUST00000065970 1749 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Pus1-201ENSMUST00000031481 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Gm12660-201ENSMUST00000123764 664 ntTSL 3 BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Jsrp1-203ENSMUST00000181039 1108 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Cdc34b-202ENSMUST00000188741 1252 ntBASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Cdc34-201ENSMUST00000020550 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Cdc34b-201ENSMUST00000021240 1233 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Myadml2-201ENSMUST00000026134 931 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Fam58b-201ENSMUST00000059468 1224 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Gm26708-203ENSMUST00000208236 1624 ntTSL 5 BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Gnb5-206ENSMUST00000215875 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Trim71-201ENSMUST00000111816 9332 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Fbxo22-204ENSMUST00000146201 2009 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Foxf2-201ENSMUST00000042054 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Prpf40aQ9R1C7 Tmem132d-201ENSMUST00000044441 6139 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 Gm20100-201ENSMUST00000209418 2272 ntBASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 Gm2011-201ENSMUST00000203124 1263 ntBASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 Gm6899-201ENSMUST00000089614 622 ntAPPRIS P1 BASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 E4f1-205ENSMUST00000226941 2642 ntAPPRIS ALT2 BASIC20.98■□□□□ 0.95
Prpf40aQ9R1C7 Art5-201ENSMUST00000094128 1518 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
Retrieved 100 of 76,532 protein–RNA pairs in 17.7 ms