Protein–RNA interactions for Protein: Q9QXK7

Cpsf3, Cleavage and polyadenylation specificity factor subunit 3, mousemouse

Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cpsf3Q9QXK7 Gjc2-201ENSMUST00000108790 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Stoml1-201ENSMUST00000034883 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Shq1-201ENSMUST00000089245 1638 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Gm38205-201ENSMUST00000192243 258 ntBASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Gm18671-201ENSMUST00000214826 683 ntBASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Arv1-201ENSMUST00000034463 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 H2-Ab1-201ENSMUST00000040828 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 C230096K16Rik-201ENSMUST00000198074 1722 ntBASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Cyp4f13-201ENSMUST00000075253 1752 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Vstm2b-201ENSMUST00000044705 2627 ntAPPRIS P1 TSL 5 BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Sstr4-201ENSMUST00000109962 1424 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Fam49b-207ENSMUST00000228226 1896 ntAPPRIS P1 BASIC20.69■□□□□ 0.9
Cpsf3Q9QXK7 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cpsf3Q9QXK7 Suz12-201ENSMUST00000017692 4373 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cpsf3Q9QXK7 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cpsf3Q9QXK7 Cnnm4-201ENSMUST00000153128 4547 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
Cpsf3Q9QXK7 Wnt10b-201ENSMUST00000023732 2226 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
Cpsf3Q9QXK7 Wnt8a-201ENSMUST00000012426 1746 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Mtus2-205ENSMUST00000110515 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Smad4-201ENSMUST00000025393 3384 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Sox12-202ENSMUST00000182625 4453 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Sos2-206ENSMUST00000183277 4512 ntAPPRIS ALT2 TSL 5 BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Gnai2-203ENSMUST00000192837 421 ntTSL 5 BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Dtnbp1-208ENSMUST00000222805 1231 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Cox14-201ENSMUST00000023761 723 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Olfr94-201ENSMUST00000055324 1304 ntAPPRIS P2 BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Donson-203ENSMUST00000117159 2215 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Tmem121-201ENSMUST00000058491 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
Cpsf3Q9QXK7 Pllp-201ENSMUST00000034227 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Rhoq-201ENSMUST00000024956 4151 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Desi2-204ENSMUST00000161075 2590 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Prcd-201ENSMUST00000106381 724 ntTSL 3 BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Cyyr1-204ENSMUST00000175700 1294 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Lhx1-204ENSMUST00000184646 1201 ntTSL 5 BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Mpzl1-210ENSMUST00000194437 643 ntTSL 3 BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 AV356131-201ENSMUST00000206201 750 ntBASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Vkorc1l1-202ENSMUST00000073945 650 ntTSL 2 BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Gm21992-201ENSMUST00000172000 1434 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Gm21992-206ENSMUST00000179909 1435 ntTSL 5 BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Cracr2b-201ENSMUST00000053670 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Schip1-206ENSMUST00000182719 2156 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Eefsec-206ENSMUST00000205179 2208 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Mrps16-201ENSMUST00000061444 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
Cpsf3Q9QXK7 Fbxw8-201ENSMUST00000049474 5000 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Rxrb-201ENSMUST00000044858 2623 ntAPPRIS P4 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Krt76-201ENSMUST00000100179 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Capzb-204ENSMUST00000102508 1674 ntAPPRIS ALT1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Smyd2-201ENSMUST00000027897 1680 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Fam193b-201ENSMUST00000021957 4341 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Polr2j-202ENSMUST00000111127 900 ntTSL 2 BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Gm7860-201ENSMUST00000121190 879 ntBASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Gm42569-201ENSMUST00000200539 472 ntBASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Cck-203ENSMUST00000215228 783 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Grsf1-201ENSMUST00000078945 2538 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Mreg-201ENSMUST00000048860 2284 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Rbm15b-201ENSMUST00000055843 6511 ntAPPRIS P1 BASIC20.65■□□□□ 0.9
Cpsf3Q9QXK7 Mpp6-201ENSMUST00000036225 1896 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Cdc37l1-205ENSMUST00000224599 1769 ntBASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Them6-201ENSMUST00000070923 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Alg1-201ENSMUST00000049207 1669 ntAPPRIS ALT2 TSL 2 BASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Htr7-201ENSMUST00000099505 1606 ntTSL 5 BASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Rbfox3-202ENSMUST00000069343 1553 ntTSL 1 (best) BASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Gls-202ENSMUST00000114510 5596 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
Cpsf3Q9QXK7 Klhl25-203ENSMUST00000205612 1343 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Gm13146-201ENSMUST00000118508 780 ntBASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Cdk19os-202ENSMUST00000143103 1124 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 6430500D05Rik-201ENSMUST00000198286 1176 ntBASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 CT010467.1-202ENSMUST00000205406 714 ntBASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Ap4s1-201ENSMUST00000021338 1035 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Faim-201ENSMUST00000035038 1019 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Hikeshi-201ENSMUST00000075010 715 ntTSL 3 BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Cbfb-204ENSMUST00000109395 2709 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Lrrc36-204ENSMUST00000213547 2396 ntAPPRIS ALT2 TSL 5 BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Gpr137c-207ENSMUST00000227086 4997 ntAPPRIS ALT2 BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Sigmar1-201ENSMUST00000059354 1640 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
Cpsf3Q9QXK7 Nkx2-1-202ENSMUST00000178477 2242 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Gm28523-201ENSMUST00000190040 1588 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 2310022B05Rik-201ENSMUST00000034464 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Gabra5-201ENSMUST00000068456 2671 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Tmtc1-201ENSMUST00000060095 8383 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Cln5-201ENSMUST00000022721 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Gm45640-201ENSMUST00000210665 1896 ntBASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Cirbp-202ENSMUST00000105365 1321 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Mrpl12-201ENSMUST00000043627 1316 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Gon7-202ENSMUST00000179263 525 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Msantd1-203ENSMUST00000202205 744 ntTSL 2 BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Ccdc84-211ENSMUST00000217270 681 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 1700081N11Rik-202ENSMUST00000221447 569 ntTSL 3 BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Slc35b2-207ENSMUST00000226086 850 ntBASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 B230217C12Rik-201ENSMUST00000054783 1189 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Pacsin2-201ENSMUST00000056177 2795 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Ppp2r5a-201ENSMUST00000067976 3088 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Brsk2-205ENSMUST00000172652 2501 ntTSL 5 BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Tmtc1-202ENSMUST00000100772 8269 ntTSL 2 BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Hipk1-201ENSMUST00000029438 4185 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
Cpsf3Q9QXK7 Clasp2-211ENSMUST00000216817 2234 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 76,532 protein–RNA pairs in 23.3 ms