Protein–RNA interactions for Protein: Q9JIF7

Copb1, Coatomer subunit beta, mousemouse

Predictions only

Length 953 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Copb1Q9JIF7 Kiz-201ENSMUST00000099278 2183 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Copb1Q9JIF7 Tekt5-201ENSMUST00000043415 1803 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
Copb1Q9JIF7 Rncr4-201ENSMUST00000194541 2234 ntBASIC21.01■□□□□ 0.95
Copb1Q9JIF7 Ccdc84-201ENSMUST00000053286 1725 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
Copb1Q9JIF7 Stac3-201ENSMUST00000035839 1790 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Trmt11-201ENSMUST00000019927 2359 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Acvr1-201ENSMUST00000056376 2394 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Zfp580-202ENSMUST00000208570 693 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Gm10645-201ENSMUST00000098605 1090 ntAPPRIS P1 BASIC21■□□□□ 0.95
Copb1Q9JIF7 Lrrc36-202ENSMUST00000109355 2411 ntAPPRIS P2 TSL 5 BASIC21■□□□□ 0.95
Copb1Q9JIF7 Papola-212ENSMUST00000168186 2436 ntTSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Fiz1-204ENSMUST00000207030 2178 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Tnfsf11-201ENSMUST00000022592 2236 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Mycl-202ENSMUST00000106252 3293 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
Copb1Q9JIF7 Igf2bp2-201ENSMUST00000100052 3899 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Copb1Q9JIF7 Metap1-201ENSMUST00000029804 2686 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Copb1Q9JIF7 Tmem79-203ENSMUST00000107553 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
Copb1Q9JIF7 AB124611-202ENSMUST00000086361 1310 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
Copb1Q9JIF7 Palm-202ENSMUST00000105379 2519 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
Copb1Q9JIF7 Coq10b-201ENSMUST00000027125 1733 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Pgf-204ENSMUST00000223220 2080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Hnrnpab-203ENSMUST00000109103 1437 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Ubxn1-202ENSMUST00000166407 1032 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Snx16-203ENSMUST00000195822 1084 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Slc25a41-201ENSMUST00000058661 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Sphk1-203ENSMUST00000100201 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Mgll-202ENSMUST00000113581 1308 ntTSL 5 BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Hdgfl3-202ENSMUST00000107305 5887 ntAPPRIS P2 TSL 1 (best) BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Ubp1-201ENSMUST00000009885 3742 ntAPPRIS ALT1 TSL 5 BASIC20.98■□□□□ 0.95
Copb1Q9JIF7 Crhr1-201ENSMUST00000093925 2460 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 4930412F12Rik-201ENSMUST00000211700 1471 ntBASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Dtymk-202ENSMUST00000112890 1055 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Bex1-202ENSMUST00000113118 754 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 D630036H23Rik-201ENSMUST00000171007 940 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Vrk1-202ENSMUST00000072040 1509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Hpca-204ENSMUST00000116444 1847 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
Copb1Q9JIF7 Tmem102-201ENSMUST00000051025 1933 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Copb1Q9JIF7 Pnkd-204ENSMUST00000113805 740 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
Copb1Q9JIF7 Gm15039-201ENSMUST00000118914 875 ntBASIC20.96■□□□□ 0.95
Copb1Q9JIF7 E030030I06Rik-202ENSMUST00000179054 2081 ntAPPRIS P4 TSL 1 (best) BASIC20.96■□□□□ 0.95
Copb1Q9JIF7 Fmnl2-204ENSMUST00000127122 5508 ntTSL 5 BASIC20.96■□□□□ 0.95
Copb1Q9JIF7 Cables2-201ENSMUST00000108891 2975 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
Copb1Q9JIF7 Kansl1-205ENSMUST00000106977 5510 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Nbn-201ENSMUST00000029879 2533 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Neil2-201ENSMUST00000038229 1932 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Hdhd5-201ENSMUST00000075303 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Htra2-202ENSMUST00000113962 1305 ntTSL 5 BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Hopxos-201ENSMUST00000148568 1661 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Cpeb3-202ENSMUST00000123727 2411 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
Copb1Q9JIF7 Galnt14-202ENSMUST00000112591 1843 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Kmt5b-204ENSMUST00000113970 2975 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Pou2f2-206ENSMUST00000108418 1934 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Fbxw2-206ENSMUST00000113080 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Kl-201ENSMUST00000078856 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Gm11747-201ENSMUST00000142751 1648 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Slc9a6-201ENSMUST00000077741 4976 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Sae1-204ENSMUST00000211741 1663 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Smox-205ENSMUST00000110182 985 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Kcnk1-202ENSMUST00000212831 1309 ntTSL 5 BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Zfp579-206ENSMUST00000162731 2489 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Pdp1-206ENSMUST00000108302 2525 ntTSL 3 BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Ripply3-201ENSMUST00000023660 1531 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
Copb1Q9JIF7 Plppr3-201ENSMUST00000092325 2766 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 C630004M23Rik-201ENSMUST00000194765 1682 ntBASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Wdr37-203ENSMUST00000164183 1780 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Cbln2-202ENSMUST00000122079 2549 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Zfp335os-201ENSMUST00000129364 1127 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Fbxo45-201ENSMUST00000042732 4179 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Brsk2-201ENSMUST00000018971 4049 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
Copb1Q9JIF7 Aire-203ENSMUST00000105396 1749 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Aire-214ENSMUST00000154374 1712 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Aire-215ENSMUST00000155021 1737 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Matk-205ENSMUST00000121205 1841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Trib3-201ENSMUST00000040312 2026 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Sh2b3-203ENSMUST00000118580 2393 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Gm6627-201ENSMUST00000218299 2386 ntBASIC20.92■□□□□ 0.94
Copb1Q9JIF7 0610010K14Rik-208ENSMUST00000108578 880 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Usf2-211ENSMUST00000172417 648 ntTSL 5 BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Copz2-201ENSMUST00000018816 930 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Hoxb7-201ENSMUST00000049352 1291 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Sebox-202ENSMUST00000125670 1300 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Coq10a-201ENSMUST00000043211 1421 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Gm38342-201ENSMUST00000195710 2980 ntBASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Erlin1-202ENSMUST00000112028 3136 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 March11-202ENSMUST00000140840 1558 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Sstr1-202ENSMUST00000110671 1752 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Klc3-203ENSMUST00000108458 1823 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Slc22a23-201ENSMUST00000040336 6251 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Copb1Q9JIF7 Tmbim1-201ENSMUST00000016309 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 76,532 protein–RNA pairs in 27.9 ms