Protein–RNA interactions for Protein: Q9ESN2

Trim39, E3 ubiquitin-protein ligase TRIM39, mousemouse

Predictions only

Length 488 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39Q9ESN2 Atad2b-201ENSMUST00000045664 8035 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.44
Trim39Q9ESN2 Nsun2-202ENSMUST00000109699 2834 ntAPPRIS P2 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim39Q9ESN2 Hoxc11-201ENSMUST00000001701 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Ints6-201ENSMUST00000053959 4993 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Ung-201ENSMUST00000031587 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Arhgdia-202ENSMUST00000106197 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Aplp1-201ENSMUST00000006828 2343 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Fdxacb1-203ENSMUST00000176335 1817 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Pkp4-210ENSMUST00000168631 4484 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Ugdh-201ENSMUST00000031103 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Gm20522-201ENSMUST00000173576 784 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Zbtb7a-204ENSMUST00000121840 1676 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Gnas-222ENSMUST00000180362 1645 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Pgam5-201ENSMUST00000059229 2044 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Matr3-209ENSMUST00000188275 1951 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Pxdc1-202ENSMUST00000053459 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Mfhas1-201ENSMUST00000037666 6408 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Prdm8-202ENSMUST00000210477 3316 ntAPPRIS P1 TSL 5 BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Hpdl-201ENSMUST00000055436 1804 ntAPPRIS P1 BASIC17.82■□□□□ 0.44
Trim39Q9ESN2 Lrrc58-201ENSMUST00000078717 8604 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Cdv3-201ENSMUST00000035484 3387 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Hoxb3os-201ENSMUST00000131275 2315 ntTSL 3 BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Cyc1-201ENSMUST00000023210 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Evi5l-209ENSMUST00000177053 1542 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Pink1-201ENSMUST00000030536 2375 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Ppp1r13b-201ENSMUST00000054815 4389 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Dleu2-203ENSMUST00000182259 1437 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim39Q9ESN2 Uqcrc1-201ENSMUST00000026743 1653 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Gas2-203ENSMUST00000107591 2232 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Catsper2-201ENSMUST00000038073 2247 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Iqsec2-207ENSMUST00000168786 5993 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Cradd-205ENSMUST00000220279 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Pcdh7-201ENSMUST00000068110 5611 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Golph3-205ENSMUST00000228671 2842 ntBASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Gm3448-203ENSMUST00000179539 787 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Tor3a-208ENSMUST00000190607 453 ntTSL 3 BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Mapkapk3-208ENSMUST00000192054 944 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 N4bp2os-203ENSMUST00000202673 699 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 AC140930.3-201ENSMUST00000222935 274 ntBASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Gm13241-201ENSMUST00000094493 780 ntBASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Gm3448-201ENSMUST00000097399 787 ntAPPRIS P5 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 4930524B15Rik-201ENSMUST00000102829 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Kcnn2-208ENSMUST00000211323 2046 ntAPPRIS P2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Otud5-203ENSMUST00000115666 2471 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Rasl10b-202ENSMUST00000108140 3156 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Rab28-203ENSMUST00000201422 1697 ntTSL 5 BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Cacnb1-202ENSMUST00000092736 1880 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Nlgn2-202ENSMUST00000108634 5568 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Trim39Q9ESN2 Nptx1-201ENSMUST00000026670 5217 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Syt6-205ENSMUST00000121834 1710 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Dynlt1f-201ENSMUST00000179554 807 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Grk2-202ENSMUST00000088737 3376 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Arfrp1-209ENSMUST00000170190 2483 ntTSL 5 BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Foxa3-201ENSMUST00000036018 2037 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Faxc-201ENSMUST00000029908 2627 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Golga5-202ENSMUST00000179218 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Satb1-211ENSMUST00000152830 5993 ntAPPRIS P2 TSL 2 BASIC17.79■□□□□ 0.44
Trim39Q9ESN2 Sema3c-201ENSMUST00000030568 5491 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Otx2-204ENSMUST00000122009 1737 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Ankrd9-201ENSMUST00000043459 1706 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Pbx1-202ENSMUST00000072863 1709 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Tmem230-206ENSMUST00000180286 1531 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Gm10300-201ENSMUST00000094662 2296 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Bcl9l-206ENSMUST00000220303 5760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Uckl1os-201ENSMUST00000122831 2018 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Jagn1-201ENSMUST00000101070 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Gm16933-201ENSMUST00000141741 2169 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Gm7102-201ENSMUST00000180168 1624 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Gm27045-201ENSMUST00000182145 1402 ntBASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Anapc5-205ENSMUST00000197074 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Anapc5-212ENSMUST00000199406 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Sept9-201ENSMUST00000019038 3784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Cstf2-202ENSMUST00000113286 2717 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Trim39Q9ESN2 Adgra2-201ENSMUST00000033876 5760 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Nin-203ENSMUST00000095666 7183 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Mcam-201ENSMUST00000034650 2989 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Rab5c-201ENSMUST00000019317 1967 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Rbm24-201ENSMUST00000037923 3086 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Gramd1a-201ENSMUST00000001280 2713 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Maneal-201ENSMUST00000064444 2727 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Alyref-201ENSMUST00000026125 3527 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Naa20-202ENSMUST00000110000 1142 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Ago4-201ENSMUST00000084289 6537 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Hdhd2-206ENSMUST00000145634 1585 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Gmds-201ENSMUST00000041859 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Trim39Q9ESN2 Mtfr1l-201ENSMUST00000102550 2025 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim39Q9ESN2 Pcnp-202ENSMUST00000114444 2295 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim39Q9ESN2 Uba5-201ENSMUST00000035166 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim39Q9ESN2 Asph-217ENSMUST00000146441 2576 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trim39Q9ESN2 Fam105a-203ENSMUST00000226170 3043 ntBASIC17.77■□□□□ 0.43
Trim39Q9ESN2 Gnptab-201ENSMUST00000020251 5390 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Arid1a-205ENSMUST00000145664 8187 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Dbnl-201ENSMUST00000020769 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 1110004F10Rik-201ENSMUST00000032899 1479 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Twist2-201ENSMUST00000007949 1329 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim39Q9ESN2 Snrpb-201ENSMUST00000103199 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 26.3 ms