Protein–RNA interactions for Protein: Q9CU62

Smc1a, Structural maintenance of chromosomes protein 1A, mousemouse

Known RBP Predictions only

Length 1,233 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Smc1aQ9CU62 Spcs1-207ENSMUST00000228767 1008 ntBASIC21.34■■□□□ 1.01
Smc1aQ9CU62 E030030I06Rik-201ENSMUST00000069372 876 ntAPPRIS ALT2 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Zc3hav1l-201ENSMUST00000058524 6536 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Ccdc149-202ENSMUST00000198008 2470 ntTSL 5 BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Prkar2b-201ENSMUST00000003079 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
Smc1aQ9CU62 Exoc3l2-201ENSMUST00000011407 2200 ntTSL 5 BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Tmem234-201ENSMUST00000102591 1437 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Anapc1-202ENSMUST00000110332 1214 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Rfc5-202ENSMUST00000111953 772 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Tusc2-203ENSMUST00000193418 410 ntTSL 3 BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Wdr41-208ENSMUST00000222995 1112 ntTSL 5 BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Nr0b1-201ENSMUST00000026036 1808 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
Smc1aQ9CU62 Dedd-203ENSMUST00000111299 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Smc1aQ9CU62 Gpatch3-201ENSMUST00000030662 2004 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Smc1aQ9CU62 Pknox2-201ENSMUST00000039674 3632 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
Smc1aQ9CU62 Srsf4-202ENSMUST00000053819 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Zfp697-201ENSMUST00000056096 5166 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Tmem250-ps-201ENSMUST00000133808 2483 ntTSL 2 BASIC21.32■■□□□ 1
Smc1aQ9CU62 Arl4c-203ENSMUST00000187810 2740 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Myef2-209ENSMUST00000152367 2071 ntAPPRIS P4 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Srxn1-201ENSMUST00000041500 2812 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Sptbn4-201ENSMUST00000011895 8747 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Tmem44-204ENSMUST00000140402 2405 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Anapc5-203ENSMUST00000196640 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Usf2-201ENSMUST00000058860 2419 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Hacd1-203ENSMUST00000114753 993 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Sumo3-209ENSMUST00000174113 512 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Smc1aQ9CU62 Zfp125-203ENSMUST00000208744 928 ntTSL 5 BASIC21.32■■□□□ 1
Smc1aQ9CU62 Hspb1-201ENSMUST00000005077 903 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
Smc1aQ9CU62 Sap18b-201ENSMUST00000074053 789 ntAPPRIS P1 BASIC21.32■■□□□ 1
Smc1aQ9CU62 Lmo2-208ENSMUST00000170926 1529 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
Smc1aQ9CU62 Stau2-201ENSMUST00000027052 2763 ntTSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 2310035C23Rik-202ENSMUST00000086721 5414 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
Smc1aQ9CU62 Dhps-201ENSMUST00000078665 1333 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Sumf1-201ENSMUST00000032191 2593 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Pelo-201ENSMUST00000109226 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Stmn4-203ENSMUST00000120229 1281 ntTSL 2 BASIC21.31■■□□□ 1
Smc1aQ9CU62 Hist2h3c2-201ENSMUST00000167403 1020 ntAPPRIS P1 BASIC21.31■■□□□ 1
Smc1aQ9CU62 Smad6-203ENSMUST00000179458 273 ntBASIC21.31■■□□□ 1
Smc1aQ9CU62 Gm6916-201ENSMUST00000205277 828 ntTSL 3 BASIC21.31■■□□□ 1
Smc1aQ9CU62 Akr7a5-201ENSMUST00000073787 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Slc9a7-201ENSMUST00000072451 2512 ntAPPRIS P2 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Hhex-201ENSMUST00000025944 1802 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Def6-201ENSMUST00000002327 2277 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Krtap5-2-202ENSMUST00000190456 1471 ntAPPRIS P2 BASIC21.31■■□□□ 1
Smc1aQ9CU62 Adcy3-202ENSMUST00000124505 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC21.31■■□□□ 1
Smc1aQ9CU62 AW047730-202ENSMUST00000181406 2579 ntTSL 1 (best) BASIC21.31■■□□□ 1
Smc1aQ9CU62 Lmbr1l-201ENSMUST00000023736 2300 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1aQ9CU62 Lfng-201ENSMUST00000031555 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1aQ9CU62 Arid1a-202ENSMUST00000105897 8175 ntAPPRIS P2 TSL 5 BASIC21.3■■□□□ 1
Smc1aQ9CU62 Cnpy3-202ENSMUST00000121671 561 ntTSL 2 BASIC21.3■■□□□ 1
Smc1aQ9CU62 Fam105a-202ENSMUST00000226145 2950 ntAPPRIS P1 BASIC21.3■■□□□ 1
Smc1aQ9CU62 Egln1-201ENSMUST00000034469 3594 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
Smc1aQ9CU62 Gm10129-202ENSMUST00000193100 1316 ntBASIC21.29■■□□□ 1
Smc1aQ9CU62 Stmn4-201ENSMUST00000074523 1303 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1aQ9CU62 Cacnb1-205ENSMUST00000107562 1745 ntTSL 1 (best) BASIC21.29■■□□□ 1
Smc1aQ9CU62 Enah-203ENSMUST00000111025 3385 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
Smc1aQ9CU62 Rabgap1l-216ENSMUST00000195442 1877 ntTSL 1 (best) BASIC21.29■■□□□ 1
Smc1aQ9CU62 1700105P06Rik-201ENSMUST00000186160 1772 ntBASIC21.29■■□□□ 1
Smc1aQ9CU62 Uqcrfs1-201ENSMUST00000042834 1363 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1aQ9CU62 Ctf1-204ENSMUST00000206506 784 ntTSL 2 BASIC21.29■■□□□ 1
Smc1aQ9CU62 AC133650.2-201ENSMUST00000217036 607 ntTSL 3 BASIC21.29■■□□□ 1
Smc1aQ9CU62 Gm9970-201ENSMUST00000068997 558 ntAPPRIS P1 BASIC21.29■■□□□ 1
Smc1aQ9CU62 Golph3-205ENSMUST00000228671 2842 ntBASIC21.29■■□□□ 1
Smc1aQ9CU62 Fzd5-202ENSMUST00000116133 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1aQ9CU62 Agmat-201ENSMUST00000038161 1407 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
Smc1aQ9CU62 Gpr62-201ENSMUST00000164834 1977 ntAPPRIS P1 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Camk2b-201ENSMUST00000002817 1872 ntTSL 5 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Gm572-201ENSMUST00000105698 1385 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Adpgk-201ENSMUST00000026266 2464 ntAPPRIS ALT1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Rasl11b-201ENSMUST00000051937 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Gm38165-201ENSMUST00000191654 486 ntTSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Tmbim4-201ENSMUST00000020446 904 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Gm36210-201ENSMUST00000210663 1279 ntAPPRIS P1 TSL 5 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Gm45890-202ENSMUST00000212188 1052 ntTSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Ferd3l-201ENSMUST00000061035 886 ntAPPRIS P1 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Rnf26-201ENSMUST00000056328 2724 ntAPPRIS P2 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Chtop-204ENSMUST00000107342 2411 ntTSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Mfsd6-205ENSMUST00000156876 4932 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Gatad2a-202ENSMUST00000116463 3363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Cerk-201ENSMUST00000044332 4518 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Nsmf-204ENSMUST00000102931 2830 ntTSL 5 BASIC21.28■■□□□ 1
Smc1aQ9CU62 Cdkl3-207ENSMUST00000109080 2749 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
Smc1aQ9CU62 Pard3-219ENSMUST00000162309 5659 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Smc1aQ9CU62 Arhgef1-204ENSMUST00000117796 3508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
Smc1aQ9CU62 Gtpbp2-217ENSMUST00000172170 2587 ntTSL 5 BASIC21.27■■□□□ 1
Smc1aQ9CU62 Gm10849-201ENSMUST00000100397 618 ntBASIC21.27■■□□□ 1
Smc1aQ9CU62 Gfra4-201ENSMUST00000028787 909 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
Smc1aQ9CU62 Cnp-201ENSMUST00000103120 2357 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
Smc1aQ9CU62 Paip2-203ENSMUST00000115735 1521 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Smc1aQ9CU62 Rell2-212ENSMUST00000177058 1762 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
Smc1aQ9CU62 Bmp6-201ENSMUST00000171970 3593 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
Smc1aQ9CU62 Plekhm2-201ENSMUST00000030751 4154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Kcnn4-202ENSMUST00000205428 1945 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Chtf8-201ENSMUST00000169312 2730 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Gpx4-202ENSMUST00000105372 959 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 Morf4l1-211ENSMUST00000191189 1223 ntTSL 5 BASIC21.26■□□□□ 0.99
Smc1aQ9CU62 AC122828.1-201ENSMUST00000220785 489 ntTSL 3 BASIC21.26■□□□□ 0.99
Retrieved 100 of 76,532 protein–RNA pairs in 19.2 ms